PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0254s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 34630.4 Da PI: 6.6438 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv+ ++ +G g+W+t + + g+ R++k+c++rw +yl Kalax.0254s0013.1.p 14 KGPWTPEEDQKLVEHIQIHGCGNWRTLPGRAGLERCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 9.6e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W+tIa++++ gRt++++k++w+++ Kalax.0254s0013.1.p 67 RGRFSVEEEEAIIHLHSILGNK-WATIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.236 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.10E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.662 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.66E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRPPCCDKD GLKKGPWTPE EDQKLVEHIQ IHGCGNWRTL PGRAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SVEEEEAIIH LHSILGNKWA TIAARLPGRT DNEIKNYWNT HIKKRLLRMG 120 IDPVTHRPRL DLLDLSAILN ANFYNGQKAF HQPQRDALVH SELLGSQRAL FQNQDFYIPN 180 IHSTIGDEHD GFYRQHGLAI YNEAQVVGNA NISDSWRGSE MGLVGDQIPD QPIYDQNGFY 240 GGSAQVGSGT DSSASASTSN SSNLTSHFDS YPSFNSRASN TGNEANETFD MQYLLDEFVY 300 SCLASGSNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148253.1 | 2e-92 | hypothetical protein PHAVU_006G192900g | ||||
Refseq | XP_009600051.1 | 1e-92 | PREDICTED: myb-related protein 308 | ||||
Refseq | XP_016470481.1 | 4e-93 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9LDR8 | 6e-90 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1S4A1N9 | 9e-92 | A0A1S4A1N9_TOBAC; myb-related protein 308 | ||||
TrEMBL | V7BQH6 | 5e-91 | V7BQH6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148253.1 | 8e-92 | (Phaseolus vulgaris) | ||||
STRING | XP_009600051.1 | 5e-92 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 5e-92 | MYB-like 102 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0254s0013.1.p |
Publications ? help Back to Top | |||
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