PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0253s0030.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 246aa MW: 27430.7 Da PI: 8.4465 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.1 | 6.8e-32 | 46 | 103 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgynWrKYGqK+vkgse+prsYY+Ct Cpv+kkvers +++++ei+Y+g+Hnhe Kalax.0253s0030.1.p 46 VDDGYNWRKYGQKQVKGSEYPRSYYKCTCFCCPVRKKVERSP-EGQIIEIIYKGQHNHE 103 59****************************************.***************8 PP | |||||||
2 | WRKY | 37.1 | 6.3e-12 | 220 | 244 | 1 | 27 |
---SS-EEEEEEE--TT-SS-EEEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrC 27 ldDg++WrKYGqK vkg+ +pr YrC Kalax.0253s0030.1.p 220 LDDGFRWRKYGQKAVKGNSHPR--YRC 244 59********************..898 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-28 | 39 | 104 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.997 | 41 | 105 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-25 | 43 | 104 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-33 | 46 | 104 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-24 | 47 | 103 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-13 | 206 | 244 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-10 | 212 | 244 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.47 | 215 | 245 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.001 | 220 | 245 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-8 | 221 | 244 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQNQAGTGSY KPPSTLEPEI ASIAPSEVFH AGPKSQPPTA ASDKPVDDGY NWRKYGQKQV 60 KGSEYPRSYY KCTCFCCPVR KKVERSPEGQ IIEIIYKGQH NHEQSPPKKS AKDGNDPIEN 120 VISQAMPDDN QLDRAEVPKR PTEAPPEQIV HEKDEKFLQE TSVDSRPLST DETRGNADSE 180 NGPMLKKRNS GSAVGEPNLP QKTVVEPKIV VRTRSEVDLL DDGFRWRKYG QKAVKGNSHP 240 RYRCV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-17 | 46 | 106 | 14 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089564.1 | 1e-71 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 2e-56 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2P2LK96 | 1e-70 | A0A2P2LK96_RHIMU; Uncharacterized protein WRKY transcription factor 06 | ||||
STRING | XP_010089564.1 | 4e-71 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-58 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0253s0030.1.p |
Publications ? help Back to Top | |||
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