PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0249s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 233aa    MW: 24926.1 Da    PI: 8.3321
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0249s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.72.9e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ Cvl+p++     p++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++ ++++
  Kalax.0249s0024.1.p   2 SCNGCRVLRKGCSETCVLRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISNVPESQRPALFQSLLFEACGRTVNPVNGAVGLLGTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          q++q+++e++l+
  Kalax.0249s0024.1.p  92 QVCQAAVETVLR 103
                          ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.6461107IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISNVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLGTGN WQVCQAAVET VLRGGTLRPV SADLLVSGRG  120
APPQPQEADE CSEEATCSNM WSASASRKRA TKKSNVTGGG GGMRVSPPGS AELGLSLSPG  180
YEQRSEKRRR PGTPSEESGT SFERGLNGHF EVEGQFEQQR RSSEARLLEL FR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765422e-99KR076542.1 Boehmeria nivea lateral organ boundaries domain protein (LBD16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922590.11e-85LOB domain-containing protein 38-like
SwissprotQ9SZE81e-75LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A2H5PCU32e-82A0A2H5PCU3_CITUN; Uncharacterized protein
TrEMBLV4SKD92e-82V4SKD9_9ROSI; Uncharacterized protein
STRINGXP_006426065.13e-83(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-78LOB domain-containing protein 39