PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0248s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25141.3 Da PI: 6.5162 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3e-17 | 80 | 130 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s y GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+++ + Kalax.0248s0051.1.p 80 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALASR 130 6799******.**********44465..**********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-21 | 80 | 140 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.91E-27 | 80 | 138 | No hit | No description |
Pfam | PF00847 | 4.7E-12 | 80 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.272 | 81 | 139 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-32 | 81 | 145 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-28 | 81 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-9 | 105 | 121 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDSSFPSYFP YPVDNTITTF PSLHQQQQHC LFQFPGQVLP YEDCPSYWNY VRACYVQNNS 60 SPENDFINLD EAVRLGKEQS SYIGVRKRPW GKFAAEIRDS TRNGVRVWLG TFDTAESAAL 120 AYDQAALASR GPMALLNFSE EVVRESLREL RCTVEENGSP VLALKKKHSK KKKRAARVAR 180 RREKIGGGGG DVDDGEMRLS GRDHVLVLED LGADYLEELL SLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-25 | 69 | 141 | 1 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181066.1 | 2e-51 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-48 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A3Q8TBB5 | 8e-49 | A0A3Q8TBB5_FRAAN; Transcription factor ERF86 | ||||
STRING | XP_009589439.1 | 9e-49 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-25 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0248s0051.1.p |
Publications ? help Back to Top | |||
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