PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0248s0047.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 532aa    MW: 57514.2 Da    PI: 6.5726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0248s0047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.4e-30231290159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d ++++itYeg+Hnh+
  Kalax.0248s0047.1.p 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaACPVRKQVQRCADDMSILIITYEGTHNHP 290
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-31217292IPR003657WRKY domain
SuperFamilySSF1182901.96E-27224292IPR003657WRKY domain
PROSITE profilePS5081128.369226292IPR003657WRKY domain
SMARTSM007743.1E-36231291IPR003657WRKY domain
PfamPF031065.8E-27232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEGYNASLER ASGGGRAMED SVELSSTDSD GDRACNLQSV TSKDAQLQSA KIEMGEVRKE  60
NERLRLHLDK MIKDYQALQK QVQDIENAEL PSTSPDFNQA SAASDSRQEF EEENELVSLS  120
LGRTASIDLK RSKVIQGNES DSLALGLEDF KVFEEPKSDA PVENLAVQGH EIIRSSEEET  180
TREELAAASS WPPQKVSKRS SEDNNEPSSY PRSSGKRARV CLRIRCETPT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA AACPVRKQVQ RCADDMSILI ITYEGTHNHP LPISATGLAS  300
TTSAAASMLL SGSSSTVANP TTSRPSHSFS AIPNKHIFQQ QYQLPTSGSS FNPNSHHQTI  360
TLDLTSSNNA ATSSQHSPHF NLFSRSSSMS YPAHQYSSRP TSLSFSSSSP ANPPSWANNN  420
NILYNSSTSM SQFSASTLDY SHFYQSTMQR NSNNPASNSN STSPPVTDSA ITAALTSDPS  480
FQSALAAALT TIIGGRVVPN FGSSSTNAQR AGSSSLMLGQ AHLPIQPDAL AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18218292174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438726.15e-96PREDICTED: probable WRKY transcription factor 61 isoform X3
STRINGGorai.008G191200.12e-94(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-58WRKY DNA-binding protein 72