PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0248s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 340aa    MW: 37925.6 Da    PI: 5.108
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0248s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-082863182355
                          SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          +yp+++++  LA+ +gL+++q+ +WF N+R ++
  Kalax.0248s0020.1.p 286 PYPTEADKIALAECTGLDQKQINNWFINQRKRH 318
                          8*****************************885 PP
2ELK37.64.7e-13238259122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK+ LlrKYsgy++sLk+EFs
  Kalax.0248s0020.1.p 238 ELKDKLLRKYSGYISSLKHEFS 259
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-1997141IPR005540KNOX1
PfamPF037901.3E-1799137IPR005540KNOX1
SMARTSM012561.9E-18148199IPR005541KNOX2
PfamPF037911.8E-20152198IPR005541KNOX2
PROSITE profilePS5121310.912238258IPR005539ELK domain
PfamPF037898.5E-11238259IPR005539ELK domain
SMARTSM011886.9E-8238259IPR005539ELK domain
PROSITE profilePS5007111.758258321IPR001356Homeobox domain
SMARTSM003891.9E-10260325IPR001356Homeobox domain
SuperFamilySSF466892.48E-18260330IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25263322IPR009057Homeodomain-like
PfamPF059202.1E-17278317IPR008422Homeobox KN domain
CDDcd000861.22E-11284322No hitNo description
PROSITE patternPS000270296319IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAEMYGCLDF AIADFTSSTP PPPLPSRHRH PLILSPLPPP PNSSLISPDD DFASFSSPSF  60
RDHHPMFGSE PSSFISVSSA MSDAASAAEI QDGDFSSALR ARVASHPLYP RLLEAYIDCQ  120
KVGSPPEVAY VLDEIRRGDN DLFGAGSVTT YFGADPELDY FMESYCDILA TYRSDLARPF  180
HEATSYLYNM EAQLSSLCNC NGASLSRVSD EAAGSSEEDL SGGESADVQF LRTSVDLELK  240
DKLLRKYSGY ISSLKHEFSQ KKKKEKLPKD AKIMLLGWWR DHYKWPYPTE ADKIALAECT  300
GLDQKQINNW FINQRKRHWK PSENMQFAVM DIGQPLVHK*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282076.11e-124PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS63e-96KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7SHP31e-123D7SHP3_VITVI; Uncharacterized protein
STRINGVIT_17s0000g08710.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-78KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]