PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0247s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Dof | ||||||||
Protein Properties | Length: 324aa MW: 34740.4 Da PI: 7.4984 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.5e-39 | 25 | 84 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+ k+ Kalax.0247s0049.1.p 25 QQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSSKRA 84 7899***************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-22 | 17 | 73 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.9E-33 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.366 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MQDIHLIGAG RVYADRRLRQ NHLEQQALKC PRCDSLNTKF CYYNNYNLSQ PRHFCKSCRR 60 YWTKGGVLRN VPVGGGCRKS SKRASSAKSG KPTAADDSKP RGSNSSSESS SLTGATAAAA 120 TDAPVASAAA DVAAMPGASP STPASADSLS AMFGFGDTLA NTKFLFPEIG NPNFSSGPMS 180 GSDCGRGGGV TDIGNFTGLM TSSSNNDPTT VSMPTSHDAV SPFRMNLQDE IPPPPQQYDH 240 PMEQWRLSSV EAKLQYMADA ARGYVDPTVQ IDRACDGGSE PLNWQQQQQN VFGLTSAVDH 300 SYWIQAHWSN ADNPSPHHQL YLP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP662917 | 4e-61 | KP662917.1 Cajanus cajan Dof25 (Dof25) gene, partial cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60850.1 | 2e-30 | OBF binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0247s0049.1.p |