PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0247s0045.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 542aa MW: 59414.5 Da PI: 7.7908 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132 | 2.1e-41 | 167 | 242 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++ Kalax.0247s0045.4.p 167 CQVHGCNKDLSSSKDYHKRHRVCDTHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPH 242 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 8.0E-33 | 161 | 228 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.479 | 164 | 241 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-37 | 166 | 244 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.8E-32 | 167 | 240 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGQDK LISEKGSDSI IEEVKYSTLS 60 GNPFLTNFAW DVRFNKGSTG EQIAPTMSSP NLFLADDGFS SKLPSPFSDS NCQESTPIDL 120 KLGRLADYGG SKTFKLFPGS SMVFSAESST PIKRTRSAGF NSQTFSCQVH GCNKDLSSSK 180 DYHKRHRVCD THSKTAKVIV KGIEQRFCQQ CSRFHLLAEF DEGKRSCRRR LAGHNERRRK 240 PHIGKHCGRS GRFQSYHGGA FNGISFTKTS SVCENMVPTN QLQLEKLGEN GWNQHIKLEF 300 ESNYNNLFGF LPANGNLLPK SSLPDVNLGK QYPCLYEGQA NQLLKSVTTR STGDDYSHGM 360 PGLPCSDLSY SVTSGGNQDS KVFSTEPAFN DFSTTMSPGA LSLLSSQSQN SPNYSTGIPM 420 TQASSITGNP ANCSGIPVSD TLLRAIPVAS VNGMSHKLAS CGLRSEISNL CPILIPDDRV 480 GVHFEDSELF HGLTADTDRL SCEDELTIDL LQLSSQLQRV ERQKQFVYAT SHTTMNTTTR 540 Q* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 167 | 240 | 11 | 84 | squamosa promoter binding protein-like 4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-44 | SBP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0247s0045.4.p |