PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0247s0045.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SBP

Protein Properties

Length: 542aa MW: 59414.5 Da PI: 7.7908

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0247s0045.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2.1e-41	167	242	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dls+ k+yh+rh+vC++hsk+++v+v+g+eqrfCqqCsrfh l efDe+krsCrrrLa+hnerrrk++ Kalax.0247s0045.1.p 167 CQVHGCNKDLSSSKDYHKRHRVCDTHSKTAKVIVKGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNERRRKPH 242 **************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.0E-33	161	228	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.479	164	241	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-37	166	244	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.8E-32	167	240	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGQDK LISEKGSDSI IEEVKYSTLS 60 GNPFLTNFAW DVRFNKGSTG EQIAPTMSSP NLFLADDGFS SKLPSPFSDS NCQESTPIDL 120 KLGRLADYGG SKTFKLFPGS SMVFSAESST PIKRTRSAGF NSQTFSCQVH GCNKDLSSSK 180 DYHKRHRVCD THSKTAKVIV KGIEQRFCQQ CSRFHLLAEF DEGKRSCRRR LAGHNERRRK 240 PHIGKHCGRS GRFQSYHGGA FNGISFTKTS SVCENMVPTN QLQLEKLGEN GWNQHIKLEF 300 ESNYNNLFGF LPANGNLLPK SSLPDVNLGK QYPCLYEGQA NQLLKSVTTR STGDDYSHGM 360 PGLPCSDLSY SVTSGGNQDS KVFSTEPAFN DFSTTMSPGA LSLLSSQSQN SPNYSTGIPM 420 TQASSITGNP ANCSGIPVSD TLLRAIPVAS VNGMSHKLAS CGLRSEISNL CPILIPDDRV 480 GVHFEDSELF HGLTADTDRL SCEDELTIDL LQLSSQLQRV ERQKQFVYAT SHTTMNTTTR 540 Q*

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MQPHVMESWC QKGSVSGDLV YVPDSLGRHS KLLEVNGQDK LISEKGSDSI IEEVKYSTLS  60
GNPFLTNFAW DVRFNKGSTG EQIAPTMSSP NLFLADDGFS SKLPSPFSDS NCQESTPIDL  120
KLGRLADYGG SKTFKLFPGS SMVFSAESST PIKRTRSAGF NSQTFSCQVH GCNKDLSSSK  180
DYHKRHRVCD THSKTAKVIV KGIEQRFCQQ CSRFHLLAEF DEGKRSCRRR LAGHNERRRK  240
PHIGKHCGRS GRFQSYHGGA FNGISFTKTS SVCENMVPTN QLQLEKLGEN GWNQHIKLEF  300
ESNYNNLFGF LPANGNLLPK SSLPDVNLGK QYPCLYEGQA NQLLKSVTTR STGDDYSHGM  360
PGLPCSDLSY SVTSGGNQDS KVFSTEPAFN DFSTTMSPGA LSLLSSQSQN SPNYSTGIPM  420
TQASSITGNP ANCSGIPVSD TLLRAIPVAS VNGMSHKLAS CGLRSEISNL CPILIPDDRV  480
GVHFEDSELF HGLTADTDRL SCEDELTIDL LQLSSQLQRV ERQKQFVYAT SHTTMNTTTR  540
Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	167	240	11	84	squamosa promoter binding protein-like 4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-44	SBP family protein

Link Out ? help Back to Top
Phytozome	Kalax.0247s0045.1.p