PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0247s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21610.9 Da    PI: 10.8593
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0247s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.41.2e-25959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien +nrq+tfskRr gilKKA+ELSvLC+aev ++++ss+g+ y ++s
  Kalax.0247s0025.1.p  9 KRIENATNRQITFSKRRYGILKKAFELSVLCEAEVVLLVLSSSGHSYNFAS 59
                         79**********************************************986 PP
2K-box55.52.4e-19841481276
                K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                          +++e ++ e++ +k++i++L+ +q+h+ Ged++ L l eL+qLe++++++++++RskK+ +l++ 
  Kalax.0247s0025.1.p  84 NTTEFWRCEIEEMKRRIDSLEASQKHFAGEDITVLGLGELKQLERKVKTGVERVRSKKSAVLTAT 148
                          56899********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.221161IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-35160IPR002100Transcription factor, MADS-box
CDDcd002656.86E-32272No hitNo description
SuperFamilySSF554552.35E-28283IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-26323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2085184IPR002487Transcription factor, K-box
PROSITE profilePS5129711.8186188IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MGRGKVELKR IENATNRQIT FSKRRYGILK KAFELSVLCE AEVVLLVLSS SGHSYNFASH  60
NVDRTIARYR NDVGLPRPAN QLLNTTEFWR CEIEEMKRRI DSLEASQKHF AGEDITVLGL  120
GELKQLERKV KTGVERVRSK KSAVLTATWL VSTLQRRILS EHISSLKQKH RALQEENTRL  180
QIKVRAVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-19169169Myocyte-specific enhancer factor 2B
1tqe_R1e-19169169Myocyte-specific enhancer factor 2B
1tqe_S1e-19169169Myocyte-specific enhancer factor 2B
6bz1_A2e-19169169MEF2 CHIMERA
6bz1_B2e-19169169MEF2 CHIMERA
6bz1_C2e-19169169MEF2 CHIMERA
6bz1_D2e-19169169MEF2 CHIMERA
6c9l_A1e-19169169Myocyte-specific enhancer factor 2B
6c9l_B1e-19169169Myocyte-specific enhancer factor 2B
6c9l_C1e-19169169Myocyte-specific enhancer factor 2B
6c9l_D1e-19169169Myocyte-specific enhancer factor 2B
6c9l_E1e-19169169Myocyte-specific enhancer factor 2B
6c9l_F1e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022737049.11e-75truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2R6PSH83e-77A0A2R6PSH8_ACTCH; MADS-box transcription factor (Fragment)
STRINGVIT_17s0000g01230.t012e-73(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.16e-29MIKC_MADS family protein