PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0246s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 427aa    MW: 46095.4 Da    PI: 9.5165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0246s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05197219223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           C+ Cg++F+  +nL++H+ + H
  Kalax.0246s0027.1.p 197 ACSQCGEVFPKLENLEHHQAVrH 219
                          6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037196224IPR007087Zinc finger, C2H2
PROSITE patternPS000280196219IPR007087Zinc finger, C2H2
SuperFamilySSF563997.58E-24221424No hitNo description
Gene3DG3DSA:3.90.228.104.0E-13223424IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKLAASSSSH SLTSILLSSY CYLLALFFFM ALFTFQQPDP KPNTKKKKKQ KEKQKQQQPS  60
SSSWDQIKNL LHCKQTEVII PGKAPVEKQS GSSKNNNGSS NYSCKSICRF GDVVHGTTRV  120
VHRADNSPEG SSVGRESGRK KIHESSGRVV GNGSGRSVGG GSCGPSGLQF RKLSGCYECH  180
TIVDPSRYPI PRRTVCACSQ CGEVFPKLEN LEHHQAVRHA VSELGPEDSG RNIVEIIFKS  240
SWLKKDTPIC KIERILKVHN TNRTIQRFED CRDAIKLRAS ASTKKNPRCA ADGNELLRFH  300
CTTLSCSLGS RNSSALCAAI PGCGICTLIR HGFQPANGGG VFTAAGSGRA HDGVEGKEGR  360
RAMVVCRVVA GRVRREGAAE PEEGGCGSGF DSVAGRAGTY SDLEELTVFN PRAILPCFVV  420
IYKSAD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015871156.11e-174uncharacterized protein LOC107408289
RefseqXP_015902946.11e-174uncharacterized protein LOC107435832
TrEMBLA0A2P5F7Z41e-177A0A2P5F7Z4_TREOI; Zinc finger, C2H2 domain containing protein
STRINGXP_010104443.11e-172(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-126C2H2-like zinc finger protein