PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0246s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27242 Da PI: 9.9417 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.6 | 7.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKAeEL vLCda+v+vi++sst+k++ey+s Kalax.0246s0009.1.p 9 KRIENTTNRQVTYSKRRNGLFKKAEELTVLCDAKVSVIMISSTQKIHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 87.8 | 2.1e-29 | 71 | 168 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 yqk+s+++++++++e+ q+ l+k+k++++ L++e+R+++Ge+L++Ls++eL+ Leq+++++ + iR++K++ + + +++l+kk ++++e+ Kalax.0246s0009.1.p 71 YQKASNTDVWSKQYERKQETLRKVKEKNKRLRTEIRQRMGECLNDLSFEELRGLEQDMDNAATAIRARKYKAIGSRTDTLRKKVRNVEEI 160 8999************************************************************************************** PP K-box 91 nkaLrkkl 98 ++L+++l Kalax.0246s0009.1.p 161 YRKLNQEL 168 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.712 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.73E-37 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 9.2E-19 | 82 | 168 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.547 | 84 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MARGKIQIKR IENTTNRQVT YSKRRNGLFK KAEELTVLCD AKVSVIMISS TQKIHEYISP 60 GITTKQVVDL YQKASNTDVW SKQYERKQET LRKVKEKNKR LRTEIRQRMG ECLNDLSFEE 120 LRGLEQDMDN AATAIRARKY KAIGSRTDTL RKKVRNVEEI YRKLNQELVC PQPNFEFARE 180 AREEDRHYGL VDNSGDYESV IALGPRVFAL HLNPNQSANM QSCGGSDLTY TLMSGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-14 | 1 | 62 | 1 | 62 | MEF2C |
5f28_B | 2e-14 | 1 | 62 | 1 | 62 | MEF2C |
5f28_C | 2e-14 | 1 | 62 | 1 | 62 | MEF2C |
5f28_D | 2e-14 | 1 | 62 | 1 | 62 | MEF2C |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 100 | RKQETLRKVKEKNKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ479358 | 0.0 | DQ479358.1 Kalanchoe blossfeldiana APETALA3-like protein (AP3-2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612346.1 | 8e-96 | floral homeotic protein DEFICIENS | ||||
Swissprot | P23706 | 1e-96 | DEFA_ANTMA; Floral homeotic protein DEFICIENS | ||||
TrEMBL | Q1HLD9 | 1e-145 | Q1HLD9_KALBL; APETALA3-like protein (Fragment) | ||||
STRING | cassava4.1_015343m | 3e-95 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-84 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0246s0009.1.p |
Publications ? help Back to Top | |||
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