PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0246s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 1095aa MW: 121959 Da PI: 8.8229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.4e-07 | 45 | 80 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E +++++a +++G++ Wk++a + R+ +++ Kalax.0246s0002.1.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAGAVR-SRSVEMV 80 6*****************99.******999.9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.93E-9 | 44 | 89 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-4 | 45 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-6 | 45 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.43E-5 | 46 | 80 | No hit | No description |
SMART | SM01135 | 6.9E-59 | 583 | 684 | IPR033471 | DIRP domain |
Pfam | PF06584 | 1.9E-32 | 583 | 683 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1095 aa Download sequence Send to blast |
MAPSRKNGNA NKQSPSANKV VAKKDEEDVK TKLKKRKLGD MLGSQWSNKE LQQFYEAYRK 60 YGTNWKKVAG AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLVAMVTDH YSVMERSDSE 120 QESNEGREAP QRAQKRSRRK IRSSTFKDVD HNLPDHSPSR FVESSSDCLS LLKANLPGSE 180 PRVVGKRTPR VPVVHSSDRD FGDKYFSAKP GRKVKMDADD HVAHEIALAL TKSSQKDKSP 240 RVSQSNRVSQ RKIRNVLSPA KNDDRMGTSA QLRGSARDEQ DHEGSMGSIG TDVDSLRRGS 300 NLRVREGVGT ADIQRKGKRF HGKKAFAEIG NEYLDDLKEA CSGTEEQNSG ALNKKRGFEI 360 PKQLLPKGLK KRSKKILFDE DESDAFEALN TLADLSLTMP EPYLDNDNRG ADINSSSAKL 420 KGKISLGGDE DITIKFGSER GASVGTIPDA EDKTGLWKRK KKPLPFCMEN SKMEPHLYHT 480 ENLQNNEDVE DVNKSLGKDY HKEGEHARAS TLHVSRDSEG DSSSKNRNRR KRDLPKSVNC 540 KDTNSSVQVE SGRPIDGIVN LKAKLAKCLS WRKAQRWCTF EWFYSAIDYP WFARREFVEY 600 LDHVGLGHIP RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNQYRESVR NHYTELRLGA 660 REGLPTDLAR PLSVGQRVIA IHPKTREIHD GSILTVDRSR CHVQFDKPDL GVEFVMDIDC 720 MPLNPLENMP ASLAINKLSE NHCGVKLNGL ASHHSASVQF NPNGNVDNSD GPVLRPLSDS 780 VVGNSTKTMR DEIAAGNVQA KARVGSISEQ QAADQPLILA QSKEADVKAL YEMTCVLDKK 840 EAIVSELKRM NDEVEENKRR DSSFEVPELF SKRYASVLVQ LDEVNDQVTF ALRCLRQRNT 900 YQGSFGLITT KPALDDVGVL SCTLNNSTSD PSKQETHVPE IAEGSRSKAQ KMVNAAMQAM 960 SSLKNSAFGG VEEAIDYLNT QLSQEEPSLS AVRPFPVSHA PEEHHSSNAG DPKLNRTPES 1020 NAQIPSELIT NCVATLFMIQ KCTEREFPPA DVAQILDSAV TSLQPCCSQN LPIYAEIQKC 1080 MGIIRSQILA LIRI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018826074.1 | 0.0 | PREDICTED: protein ALWAYS EARLY 3 isoform X2 | ||||
TrEMBL | A0A2I4F360 | 0.0 | A0A2I4F360_JUGRE; protein ALWAYS EARLY 3 isoform X2 | ||||
STRING | cassava4.1_000519m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0246s0002.1.p |