PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0242s0027.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 148aa MW: 16164.5 Da PI: 9.1484 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 21 | 55 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ Cgt+kTplWR gp g+k+LCnaCG++ rk+++ Kalax.0242s0027.2.p 21 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKRRR 55 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.2E-12 | 15 | 66 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-13 | 18 | 60 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.1E-15 | 19 | 54 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.06E-12 | 21 | 55 | No hit | No description |
Pfam | PF00320 | 2.0E-16 | 21 | 55 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 21 | 46 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.176 | 21 | 51 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MVSGMMDDGS ECGGLASKKL CVDCGTSKTP LWRGGPAGPK SLCNACGIRS RKRRRALLES 60 TEADENKKKM IGKKMKHMIN SNSDSNGSHN SSSSSSSNNG HLECSRKDRL TAMWDILKPR 120 KVRMEELNEE QEAAVLLMAM SYGYDRC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 54 | RKRRR |
2 | 52 | 75 | RRRALLESTEADENKKKMIGKKMK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-22 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0242s0027.2.p |