PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0241s0052.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 26737 Da PI: 7.071 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.8 | 2.1e-19 | 75 | 129 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R++++++ql++Le+ F+++ ++ +++ LA++l+L+ rqV +WFqNrRa+ k Kalax.0241s0052.1.p 75 KRRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 129 8999*************************************************88 PP | |||||||
2 | HD-ZIP_I/II | 103.9 | 1.4e-33 | 76 | 166 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ++rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l e+++L++ev+ L++ l Kalax.0241s0052.1.p 76 RRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQHEVHILQTLL 165 89***********************************************************************************99877 PP HD-ZIP_I/II 92 k 92 k Kalax.0241s0052.1.p 166 K 166 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-19 | 45 | 132 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-19 | 60 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.091 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-16 | 74 | 135 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.66E-16 | 75 | 132 | No hit | No description |
Pfam | PF00046 | 1.0E-16 | 75 | 129 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MEWSLPIAEA NPSSSTNLPF SVSATNNHYP LMPYYPSFNF NHHHPHDHSA ASPEMETREI 60 TDMESSGNRQ SEEAKRRRRI SADQLKTLEK SFQEEAKLRP AKKVSLAREL NLEPRQVAIW 120 FQNRRARVKS KNLEKMYDEL REQFNVLYLE KQKLQHEVHI LQTLLKRQVC CNQHVSTYEE 180 ISVDNTSATA ALPAAPLADF YSVGEAGERF QTPHGLPSCT QGTPAWAAQL PPEP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 79 | KRRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-31 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0241s0052.1.p |