PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0241s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 291aa    MW: 32436.7 Da    PI: 6.9443
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0241s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.43.2e-1218108186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          +Wt++   +L+ea  ++  +l+rg+l+ ++W++v++ +     + ++  r+ +qCk++++ ++k+yk +k++ +       s++p++++l
  Kalax.0241s0002.1.p  18 CWTEEASSTLVEAWARRFLDLNRGNLRLKDWQHVADLVnarhgHTKKTYRTDVQCKNRIDTIKKKYKVEKARVSASPGMLGSSWPFYERL 107
                          7*************************************988777778889*********************999986666779******9 PP

             trihelix  86 e 86 
                          +
  Kalax.0241s0002.1.p 108 D 108
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.3E-2316110No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSDSATPSSR SVPVCEDCWT EEASSTLVEA WARRFLDLNR GNLRLKDWQH VADLVNARHG  60
HTKKTYRTDV QCKNRIDTIK KKYKVEKARV SASPGMLGSS WPFYERLDEL IGSSLKKPPA  120
PPPAATVTVS DSLSHSPPMA LPLPFPYRKS APLATAVLPK KRASPMDDSY FRRNYSAVAA  180
AAAAAATADD DEDDEEVGEE DGDDDLVQGF RGDEESEDGI RKLARAIRKF GDVYEKVEAE  240
KQTQMIEMEK QRMQLAKDLE VQRMQMFVNM QLQLKKIKIA KGNKSNGESI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025374.11e-100PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A061GEJ17e-99A0A061GEJ1_THECC; Sequence-specific DNA binding transcription factors isoform 2
STRINGEOY279951e-98(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-60sequence-specific DNA binding transcription factors