PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0239s0045.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 362aa MW: 39281.9 Da PI: 6.516 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 169 | 219 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ l+ge Kalax.0239s0045.1.p 169 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAFMLRGE 219 59******9.**********965...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.19E-34 | 168 | 228 | No hit | No description |
SMART | SM00380 | 3.3E-39 | 169 | 232 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.879 | 169 | 226 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 169 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-23 | 169 | 226 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.5E-11 | 170 | 181 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-14 | 170 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 192 | 208 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MAALMDLYSS NRVGSDPFMG GELMEALEPF MRSAPPPPCS SPPSASSSSF ANPIYSSSSS 60 SSIQPSFTHP QLYPNPNVFA PGFDSQLDQH SFFNSSSSSF PASSQFQMFQ SYQSQYDPLV 120 NSFPPPCTSV SAPVSNLARE SQQNYVMSFL SAKPVQMKLS ASPAKPTKLY RGVRQRHWGK 180 WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAFMLRGEF ARLNFPNLKH SGSVIRGEFG 240 EFKPLHSSVD AKLQAICDEM SEAQKQGKST GRRKSSKAAA LAVNAPPPPA AEDTTGGDGF 300 VCKAENLSNN SGSDGSAGSS PISELTFPEF DEPAGWNWNP MSENFMLQKH PSEIDWASIL 360 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 168 | 226 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-20 | 168 | 232 | 4 | 69 | ATERF1 |
3gcc_A | 2e-20 | 168 | 232 | 4 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229632 | 2e-38 | KP229632.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF09) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315885.1 | 4e-92 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A2N9F9N0 | 2e-91 | A0A2N9F9N0_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_36.112 | 2e-90 | (Carica papaya) | ||||
STRING | XP_008362598.1 | 1e-90 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 3e-60 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0239s0045.1.p |