PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0236s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 421aa MW: 46749.3 Da PI: 5.2587 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62 | 1.3e-19 | 149 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+f taeeAa a+++a+ +++g Kalax.0236s0040.1.p 149 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAEEAALAYDEAAIAMYG 199 56*****999.**********8...3.35***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.01E-32 | 149 | 208 | No hit | No description |
Pfam | PF00847 | 1.7E-14 | 149 | 199 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-31 | 150 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 150 | 209 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-37 | 150 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.431 | 150 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 151 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-10 | 173 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 421 aa Download sequence Send to blast |
MGRDGASGKF EPHALKIEPY LINTLRLRKF SIFLKHNDIS RTLSKQRLAQ EKSSDAGENQ 60 ILGFVHRFWT SIQRLMACAE FMSAGGNLHK MKTRIRKRTG TKPVAETIAK WKQYNKKLDS 120 EGNPIRRVPA KGSKKGCMKG KGGPENYHCN YRGVRQRTWG KWVAEIREPN RGSRLWLGTF 180 PTAEEAALAY DEAAIAMYGP CARLNMPDRV VKKHDSEENS KDSSTVISTC CSESMSTASN 240 NSDALREDSA ERHYQSKLVM PKLEKVARSS VPNPDVPCLT DEAASSNLEA ESRNDPAVSM 300 DANQGDGVND WLQTQSYSMD ELFDAQELLA EIENNPLERD ARQDEGHPPS TDLFSVLNDD 360 NTQCMGSVDL AGQPLNPDAG LFEGIDVGLL GDGLDLSFLE PGRQEDEAPF DYCSFFDLDL 420 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-19 | 150 | 210 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0236s0040.1.p |