PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0233s0019.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 358aa MW: 39791 Da PI: 4.5452

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0233s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	184	227	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL +++Y+k+L Kalax.0233s0019.1.p 184 LMAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILADTIDYMKEL 227 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.326	178	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-15	182	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-12	184	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	185	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-8	185	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.85E-5	185	227	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MELSQSFLLE ELLGLRRENC STYQTGVAMD EFYTDGWSCD FIDESQVLLA ASADAGMATA 60 PGFAMPQMEP YFDVPFSEVY NSLDASFTAP VTTVADQFSL AYEINNGTTL LPPIHDQYTS 120 MVDEEFTFLS NGVQHVDQDK YASGCKVEMV LSPGENLGSS KSLGGGKERR NGVKKVGGQP 180 SKNLMAERRR RKRLNDRLSM LRSIVPRISK MDRTSILADT IDYMKELLEK VSKLEEEEKE 240 HTEAGPINKL KQLKSSEGQA KNSPKFDIKM GEKDTRIDIC CTTRPGLLIS TVNTLETLGL 300 EIQQCVISCF NDFSMQAACS QVSEEPMELT TEEIKQALFR NAGYEGRCLK ESSQEMS*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MELSQSFLLE ELLGLRRENC STYQTGVAMD EFYTDGWSCD FIDESQVLLA ASADAGMATA  60
PGFAMPQMEP YFDVPFSEVY NSLDASFTAP VTTVADQFSL AYEINNGTTL LPPIHDQYTS  120
MVDEEFTFLS NGVQHVDQDK YASGCKVEMV LSPGENLGSS KSLGGGKERR NGVKKVGGQP  180
SKNLMAERRR RKRLNDRLSM LRSIVPRISK MDRTSILADT IDYMKELLEK VSKLEEEEKE  240
HTEAGPINKL KQLKSSEGQA KNSPKFDIKM GEKDTRIDIC CTTRPGLLIS TVNTLETLGL  300
EIQQCVISCF NDFSMQAACS QVSEEPMELT TEEIKQALFR NAGYEGRCLK ESSQEMS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	193	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264407.1	1e-110	PREDICTED: transcription factor bHLH93 isoform X1
Swissprot	Q9LSL1	1e-74	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A060A490	1e-108	A0A060A490_VITRI; Inducer of CBF expression 4
TrEMBL	A0A438FBI2	1e-108	A0A438FBI2_VITVI; Transcription factor bHLH93
STRING	VIT_00s1312g00010.t01	1e-109	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-65	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Kalax.0233s0019.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]