PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0232s0042.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 147aa    MW: 16266.7 Da    PI: 8.8227
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0232s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.6e-192761135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Kalax.0232s0042.1.p 27 CVDCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 61
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-132178IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-132261No hitNo description
Gene3DG3DSA:3.30.50.101.1E-152561IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-122761No hitNo description
PROSITE profilePS5011412.1762757IPR000679Zinc finger, GATA-type
PfamPF003208.3E-172761IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MVAEEQLCDS TDDQGLDCKE VSLKKLCVDC GTSKTPLWRG GPAGPKSLCN ACGIRSRKKR  60
RALLGLAKPD EKKEKDKKKS KHMMNNINII NGSKNRSSCC SSSDRYSESM FKCDILKPHN  120
VRIEELNEEQ QAAVLLMALS HGFNSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482165.16e-32PREDICTED: GATA transcription factor 15-like
TrEMBLA0A0D2RA281e-30A0A0D2RA28_GOSRA; Uncharacterized protein
TrEMBLA0A2P5S6591e-30A0A2P5S659_GOSBA; Uncharacterized protein
STRINGGorai.005G065300.12e-31(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-24GATA transcription factor 15