PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0231s0019.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Dof
Protein Properties Length: 372aa    MW: 40702.3 Da    PI: 9.3915
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0231s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99e-3881140362
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          e+al+cprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+  k+s
  Kalax.0231s0019.1.p  81 ETALRCPRCESSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRATKRS 140
                          67899*************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3364135IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3183138IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.86384138IPR003851Zinc finger, Dof-type
PROSITE patternPS01361086122IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVFSSRPLYF DPPNQQYHHQ HQQQQQQQQV SLFGAGNEIS NTSGLQHLPL QQPPVAPGGS  60
RTIRPGSMTD RARMAKVPLP ETALRCPRCE SSNTKFCYFN NYSLTQPRHF CKTCRRYWTR  120
GGALRNVPVG GGCRRATKRS SKKRLKSPAA SGTDIATTTN STDQAFGSSS SAGLNGNNSM  180
DGACYLPFYP KGMSHMGHEF EAHYTGGVSF GGAPNDPHIA KLFQNDQQWG RLAEATTGSS  240
AVTATSLTQM HPPFPFMANL AQQQQQEHSA IPSGLLYQFN QQGLSGSSTL DSLRTCSNRS  300
MMNNSMMDPT AMTQFANIKM EDSNDKGLRR LLGLQTQAAA SNHMTSGDHQ FNWLDNGTAN  360
AWTDLSGFYT P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-43DNA binding with one finger 2.4