PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0229s0053.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 785aa MW: 87098.2 Da PI: 8.608

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0229s0053.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.9	2.3e-05	71	126	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F + ++s++e +e+++k g+t +qV+ F +R++ + Kalax.0229s0053.3.p 71 KKPRDLLNPKAVAYMQSVFSIKDKISKKETREISAKFGITLAQVRDIFACQRTRVR 126 79999***************************************998888888866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.649	68	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	71	136	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MDGLSARLAA EDEGIGTSME SFQKSLESQK NLFHSQLVEM QRIVSTQCEF TGVNPLSQEM 60 AAGALSIPIG KKPRDLLNPK AVAYMQSVFS IKDKISKKET REISAKFGIT LAQVRDIFAC 120 QRTRVREIVQ STQEMSRDRR KVLKELQDGN QENEDSIMRS DLSPVVNTGP VTCDTNMSNA 180 VEPEINGTTL QSDSRPTETD VGTARADSPE FSLATYIPIT DEEDIPEPSR TETAPHETSG 240 PNYAEPVPLN VFPQTRSESL VLNSAGISDA GMQPKYIPEE VIPGLDGLEK NFIENIFNLM 300 STEETFSGKV KRMEGILKVE NPSVLNWFLT RGGMMILAPW LGQAAVEEQT SVLHVILKVL 360 FHLPLAKAST EQMSVILQSV NSLRFYRTQD ISNKARICLA KWSKLFAKNQ PMRKRDGVKS 420 QVEVAKHKLL TQSINEIIGN ESRQSELENT GGNLTSSNKA IENLGKRDCP LQMEMLTASS 480 DESMKRSSMG LPASQGRGRR KVQLVEHPGQ KLTGRSQQAA RASVSQSRPV STDDIKKAKL 540 RKEFMEAKYG KKKPEHESLK LGMNQSCAIV SASRVPTQTV PHERRNSRLP LPKTVTEHKP 600 PVVLHPYRTD EKKKDLLPLQ SADELKQPLV PLQNSTVEFE PTTLHLSGNT DEQPMMPMAK 660 SIAEQMQSMV PIFNKYIQTE VSPENGAEQA QPMVSVSSDS AQPQFNSNGT AEQRQPLVPI 720 ANSMVQQAPR QKKTIPESKE PFWKQCKRVQ VQWKTPPGTL IQSTYSLNVD DKGNGLATTI 780 IKIN*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MDGLSARLAA EDEGIGTSME SFQKSLESQK NLFHSQLVEM QRIVSTQCEF TGVNPLSQEM  60
AAGALSIPIG KKPRDLLNPK AVAYMQSVFS IKDKISKKET REISAKFGIT LAQVRDIFAC  120
QRTRVREIVQ STQEMSRDRR KVLKELQDGN QENEDSIMRS DLSPVVNTGP VTCDTNMSNA  180
VEPEINGTTL QSDSRPTETD VGTARADSPE FSLATYIPIT DEEDIPEPSR TETAPHETSG  240
PNYAEPVPLN VFPQTRSESL VLNSAGISDA GMQPKYIPEE VIPGLDGLEK NFIENIFNLM  300
STEETFSGKV KRMEGILKVE NPSVLNWFLT RGGMMILAPW LGQAAVEEQT SVLHVILKVL  360
FHLPLAKAST EQMSVILQSV NSLRFYRTQD ISNKARICLA KWSKLFAKNQ PMRKRDGVKS  420
QVEVAKHKLL TQSINEIIGN ESRQSELENT GGNLTSSNKA IENLGKRDCP LQMEMLTASS  480
DESMKRSSMG LPASQGRGRR KVQLVEHPGQ KLTGRSQQAA RASVSQSRPV STDDIKKAKL  540
RKEFMEAKYG KKKPEHESLK LGMNQSCAIV SASRVPTQTV PHERRNSRLP LPKTVTEHKP  600
PVVLHPYRTD EKKKDLLPLQ SADELKQPLV PLQNSTVEFE PTTLHLSGNT DEQPMMPMAK  660
SIAEQMQSMV PIFNKYIQTE VSPENGAEQA QPMVSVSSDS AQPQFNSNGT AEQRQPLVPI  720
ANSMVQQAPR QKKTIPESKE PFWKQCKRVQ VQWKTPPGTL IQSTYSLNVD DKGNGLATTI  780
IKIN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	535	553	KKAKLRKEFMEAKYGKKKP

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009535.1	1e-154	PREDICTED: homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	5e-77	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	6e-72	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0229s0053.3.p

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]