PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0229s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 30431.7 Da PI: 9.8354 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.3e-20 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d + +r r +lg+++t+eeAa+a+++a+++l+ge Kalax.0229s0012.1.p 34 RFVGVRQRP-SGRWVAEIKDSC---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 589******.7*********42...35**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.336 | 34 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.93E-31 | 34 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-20 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MASCDSTKSR LTGAGGGGAR QQMAMGKAAV VGRRFVGVRQ RPSGRWVAEI KDSCQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNY PYSKRPCGSS VNSFGNGDGN HELSCSSLKA 120 KLSKSLQSVM GRSSESSKSS KNRVSDPLTF ASVFHLRGNG GPQEYRNDTI DKAVQPSIVV 180 PSHEVNQSSS WDSSSLSDSS PDRVTVQSDT VGSDLTEKFS NMERLTCPNQ TMNWDSMLSD 240 HWQGEFTGNT ASSRRKKFKV SSSVMVPPTF SSFPFNDVK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 34 | 93 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015900171.1 | 9e-74 | dehydration-responsive element-binding protein 2B-like | ||||
Refseq | XP_021622987.1 | 6e-74 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | A0A2G9HFD5 | 1e-78 | A0A2G9HFD5_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_028498m | 4e-70 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-09 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0229s0012.1.p |