PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0225s0045.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

SRS

Protein Properties

Length: 318aa MW: 32865.8 Da PI: 7.626

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0225s0045.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	187.5	5.1e-58	97	250	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstkl 91 +++CqdCGnqakkdC h+RCRtCCksrg++C+th+kstWvpa++rrerq +++ s + +a + k+ r ++++++ s++ + Kalax.0225s0045.2.p 97 GSACQDCGNQAKKDCCHRRCRTCCKSRGYECSTHIKSTWVPASRRRERQLLTSSVSMSVSAC---SGVKKARLVslnAATSHTSNSNMPV 183 679*******************************************87777765554443...3333333331112222333333333 PP DUF702 92 ssaeskkeletss.......lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s e+++ + lP ++ ++a f+cv+v+s++dge+e+ Yq+ v+igGhvfkG+Ly+qG e+ Kalax.0225s0045.2.p 184 ESFETSSCH---QdasfketLPGQILAPATFKCVKVTSINDGEDEFVYQAMVKIGGHVFKGFLYNQGEES 250 332222222...12335556*********************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.8E-55	98	249	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-25	100	141	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.4E-25	201	247	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MGMGGLRDLF VVSPTSSFHH SSLNEPSLMA EGLGSGNPAT ALGVGLGVIP LLTAVPCVAE 60 GAGANGRSGG GGIQLWQSHA QNGGNNNNNA SVLQTIGSAC QDCGNQAKKD CCHRRCRTCC 120 KSRGYECSTH IKSTWVPASR RRERQLLTSS VSMSVSACSG VKKARLVSLN AATSHTSNSN 180 MPVESFETSS CHQDASFKET LPGQILAPAT FKCVKVTSIN DGEDEFVYQA MVKIGGHVFK 240 GFLYNQGEES GTREHQQQGL PNISDLHLGG GNGGCILHKG GCSMTDLEAP LADVYGGASN 300 SGGGMLGGTG YGNPIIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ847757	0.0	GQ847757.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS1 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276642.1	2e-93	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	1e-69	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	E2D549	1e-111	E2D549_KALBL; SHI-related protein SRS1 (Fragment)
STRING	XP_010276642.1	7e-93	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-70	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Kalax.0225s0045.2.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]