PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0225s0030.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SRS
Protein Properties Length: 316aa    MW: 32742.7 Da    PI: 7.8176
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0225s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702186.88.5e-58972485154
               DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel......kskkqsalss 88 
                          +++CqdCGnqakkdC h+RCRtCCksrg++C+th+kstWvpa++rrerq  +++   + +a    +  k+ r        +s+++  ++s
  Kalax.0225s0030.1.p  97 GSACQDCGNQAKKDCCHRRCRTCCKSRGYECSTHIKSTWVPASRRRERQLLTSSVWMSVSA---CSGVKKARLVslnaatTSNSNMPVES 183
                          679*********************************************8777776554433...33344444331111112222222333 PP

               DUF702  89 tklssaeskkeletss....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                           ++ss ++       s    lP ++ ++a f+cv+v+s++dge+e+ Yq+ v+igGhvfkG+Ly+qG e+
  Kalax.0225s0030.1.p 184 FETSSCHQDA-----SfketLPGQILAPATFKCVKVTSINDGEDEFVYQAMVKIGGHVFKGFLYNQGEES 248
                          3333333333.....23335***********************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-5498247IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.3E-25100141IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.3E-25199245IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGMGGLRDLF VVSPTSSFHH SSLNEPSLMA EGLGSGNPAT ALGVGLGVIP LLTAAPCVAD  60
GAGANGRSGG GGIQLWQSQA QNGGNNNNNA SVLQTIGSAC QDCGNQAKKD CCHRRCRTCC  120
KSRGYECSTH IKSTWVPASR RRERQLLTSS VWMSVSACSG VKKARLVSLN AATTSNSNMP  180
VESFETSSCH QDASFKETLP GQILAPATFK CVKVTSINDG EDEFVYQAMV KIGGHVFKGF  240
LYNQGEESGT REHQQQGLPN ISDLHLGGGN GGRILHKGGC SMTDLEAPLA DVYGGASNSG  300
GGMLGGTGYG NPIIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8477570.0GQ847757.1 Kalanchoe blossfeldiana cultivar Celine SHI-related protein SRS1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276642.12e-95PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBLE2D5491e-107E2D549_KALBL; SHI-related protein SRS1 (Fragment)
STRINGXP_010276642.19e-95(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.23e-67Lateral root primordium (LRP) protein-related