PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0222s0047.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 352aa MW: 39048.5 Da PI: 7.0635

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0222s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.4	5.9e-32	200	254	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt++LH++Fve+v++LGGs+kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Kalax.0222s0047.1.p 200 KMRIRWTQDLHDKFVECVNRLGGSDKATPKAILKLMDSDGLTIFHVKSHLQKYRT 254 67****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.041	197	257	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-28	198	255	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.59E-16	198	254	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	200	255	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	204	253	IPR001005	SANT/Myb domain
Pfam	PF14379	8.5E-21	281	327	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MNSHDNNNGL ERIRLNHGLM SSGCSYDFVN SYSPSVSQSD PRWHSMGGGG SEIMHSQTLI 60 TPTKLPSTIL SRLGSPASAF YATERCMAGF PQSRLDQTPS FPLDSQFMNT LQSVVQPHLL 120 TANQYKSVFR NNPATSGNST LAPTVSIPFQ GIPDDKFCSS SSANTGLFSW SQTDGGNQYV 180 ETCSSHTTNR FSPGSTLSSK MRIRWTQDLH DKFVECVNRL GGSDKATPKA ILKLMDSDGL 240 TIFHVKSHLQ KYRTAKYLPE SAEGKDTRSE SVHLDMKTGL QIKEALQMQL DVQKTLHEQL 300 EIQRNLQLRI EEQGKQLRMM FDQHHKTNTS SSGHDDPTED NHPCEDTSVQ S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MNSHDNNNGL ERIRLNHGLM SSGCSYDFVN SYSPSVSQSD PRWHSMGGGG SEIMHSQTLI  60
TPTKLPSTIL SRLGSPASAF YATERCMAGF PQSRLDQTPS FPLDSQFMNT LQSVVQPHLL  120
TANQYKSVFR NNPATSGNST LAPTVSIPFQ GIPDDKFCSS SSANTGLFSW SQTDGGNQYV  180
ETCSSHTTNR FSPGSTLSSK MRIRWTQDLH DKFVECVNRL GGSDKATPKA ILKLMDSDGL  240
TIFHVKSHLQ KYRTAKYLPE SAEGKDTRSE SVHLDMKTGL QIKEALQMQL DVQKTLHEQL  300
EIQRNLQLRI EEQGKQLRMM FDQHHKTNTS SSGHDDPTED NHPCEDTSVQ S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	200	257	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308371.3	1e-85	myb family transcription factor PHL5
TrEMBL	A0A2K2A4K2	3e-84	A0A2K2A4K2_POPTR; Uncharacterized protein
STRING	POPTR_0006s20540.1	2e-84	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0222s0047.1.p