PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0222s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 255aa MW: 27510.7 Da PI: 6.6393 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.8e-05 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Kalax.0222s0033.1.p 154 HQCSICGSEFSSGQALGGHMRRH 176 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 200 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.56E-6 | 88 | 109 | No hit | No description |
Pfam | PF13912 | 0.0017 | 88 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.56E-6 | 149 | 176 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 153 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 154 | 176 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0099 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MELPEHEAIA VAAPVHQEPL TLTIDRGKRA KRPSRVSSDE EEEDERRSYD SVVTEEEQDL 60 AHCLILLARA ELVRGGKRKV ADVGGCLECK ACNKTFPSFQ GLDGRRAGHG KPRSEINDCD 120 AEKQLSTSLQ LSTANSRNGN VSAVKASALS NRVHQCSICG SEFSSGQALG GHMRRHRAVP 180 APVRSPCTGV SSPATSMGEV KTLSVFSLDL NLPAPEESEI DHQRGVEDEQ NAAFFQQNTP 240 VFSAHAHALR GCHH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-31 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0222s0033.1.p |