PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0222s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32698.7 Da PI: 5.8176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 5.8e-49 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+P+deel+++yL kk++++++ +++e+d++++ePw+Lp+++k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd+ Kalax.0222s0012.1.p 10 LPPGFRFNPSDEELICHYLYKKIANEEVLK-GTLTEIDLHTCEPWQLPETAKLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDR 98 79*************************655.78***************88888999********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v++ ++e+ g++ktL+fy +rap+g kt W+mhe+r Kalax.0222s0012.1.p 99 TVYDPdTSEVLGMRKTLIFYLNRAPNGIKTGWIMHEFRH 137 ****9778889**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-59 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.434 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-26 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGLKDIEATL PPGFRFNPSD EELICHYLYK KIANEEVLKG TLTEIDLHTC EPWQLPETAK 60 LNASEWYFFS FRDRKYATGY RTNRATTCGY WKATGKDRTV YDPDTSEVLG MRKTLIFYLN 120 RAPNGIKTGW IMHEFRHESP HTPPKEDWVL CRVFYKSKPE ENTNTTSSSP ISPPSNTFQY 180 NLKTSLSAST PNNATNNEII SMTPQNNNTF HKHNIVLPCE YQPQIMSLNP NSLEQHIIVL 240 EPNQLAVAPI SIAALAHTSD NDDGYDFLRF LWELKQDDNN AMDIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-46 | 1 | 157 | 1 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604496.1 | 1e-109 | protein CUP-SHAPED COTYLEDON 3 | ||||
Swissprot | Q9S851 | 1e-60 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | K7MYQ1 | 1e-107 | K7MYQ1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G34881.1 | 1e-108 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-86 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0222s0012.1.p |
Publications ? help Back to Top | |||
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