PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0221s0005.7.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 351aa    MW: 38610.7 Da    PI: 8.002
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0221s0005.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP89.57.4e-2853158289
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+   k+ i++l+ +                          
  Kalax.0221s0005.7.p  53 SGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLIDSTKEDIDKLPPLqlpqgslgmfackdnwininnnahmq 142
                          579*************************************************************66554444444444444333333322 PP

                  TCP  66 ssssaseceaesssssasnsssg.............k 89 
                          +                     +             +
  Kalax.0221s0005.7.p 143 D---------------------PdmvgerskywdylD 158
                          0.....................133333333333331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.1E-2654160IPR005333Transcription factor, TCP
PROSITE profilePS5136928.69755113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTSSESRELV PAAKQEESAD LADNSRLGNA KTSSRQWSGF RNNPRIVRVS QSSGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IQLYDLQERL GLSQPSKVID WLIDSTKEDI DKLPPLQLPQ  120
GSLGMFACKD NWININNNAH MQDPDMVGER SKYWDYLDAA SKAKSKEIER DNELINQAEK  180
GRWMETNSQH GNHFQGLKGY NNISQASAQN FFPVAGGSPL LGSNGTSVDN NPYNQSWDPS  240
STPSLAQLGS RGISSMHQAH NVQNNCNLLS SSSSAFGTLP SAGPQLFFCP SPSNSSFFPV  300
TTYAPYTTTS LEADPRQINS LFHLLTSTSP IKSFQQNSAN PKFHSQDVDN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1860114155Putative transcription factor PCF6
5zkt_B2e-1860114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037593.11e-81PREDICTED: transcription factor TCP5
TrEMBLA0A061G4Y72e-80A0A061G4Y7_THECC; Teosinte branched 1, putative
STRINGEOY220944e-81(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5