PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0221s0005.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TCP
Protein Properties Length: 314aa    MW: 34743.4 Da    PI: 8.4772
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0221s0005.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP88.12e-2753159289
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................... 65 
                           g+kdrhsk++T +g+RdRR+Rls+++a++++dLq++LG+ ++sk i+WL+   k+ i++l+ +                          
  Kalax.0221s0005.2.p  53 SGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQERLGLSQPSKVIDWLIDSTKEDIDKLPPLqlpqgslgmfackdnwininnnahmq 142
                          579*************************************************************66555554444444444333333333 PP

                  TCP  66 ssssaseceaesssssasnsssg..............k 89 
                          +                     +              +
  Kalax.0221s0005.2.p 143 D---------------------PdmvgerskywdyldA 159
                          0.....................1333333333333321 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.5E-2654160IPR005333Transcription factor, TCP
PROSITE profilePS5136928.69755113IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MTSSESRELV PAAKQEESAD LADNSRLGNA KTSSRQWSGF RNNPRIVRVS QSSGGKDRHS  60
KVCTVRGLRD RRIRLSVPTA IQLYDLQERL GLSQPSKVID WLIDSTKEDI DKLPPLQLPQ  120
GSLGMFACKD NWININNNAH MQDPDMVGER SKYWDYLDAA SKAKSKEIER DNELINQAEK  180
GRWMETNSQH GNHFQGLKGY NNISQASAQN FFPVAGGSPL LGSNGTSVDN NPYNQSWDPS  240
STPSLAQLGS RGISSMHQAH NVQNNCNLLS SSSSAFDPRQ INSLFHLLTS TSPIKSFQQN  300
SANPKFHSQD VDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1860114155Putative transcription factor PCF6
5zkt_B3e-1860114155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037593.11e-70PREDICTED: transcription factor TCP5
TrEMBLA0A061G4Y73e-69A0A061G4Y7_THECC; Teosinte branched 1, putative
STRINGEOY220945e-70(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5