PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0219s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 439aa    MW: 48777.5 Da    PI: 5.9244
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0219s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.14.8e-11255298654
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          n+ Er+RR +   +++ L++llP++      K++ a+i+ +A++YIk+L
  Kalax.0219s0013.1.p 255 NATERKRRVEFSGKYDALKSLLPSP-----NKPDRASIVGEAIDYIKEL 298
                          99**********************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.516249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12254314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-11255310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-11255303No hitNo description
PfamPF000101.5E-8255298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAASKDTSSF DATCVPEEGF HAANMMASST TNSFEENMKF PGEEFSHSSH KLGFGIMDNH  60
YYASNSSADN LMQEVLCDSN QDPAGDQMSW NAHGVNEMQN GHRGFHVPNL QDHPYPATHE  120
LLDLFNLPRC SASSFVPNSL ISFSKPVHKV SNFSSSLGFL GDHAQPENMP ASANLYDPLY  180
QMSPPPQQPS IRELIQSTLP RCCNFSGLNG SLYGGEDERD VVGGAYQDLE GRDFDSEVLE  240
FTGEKPRKGK GKEGNATERK RRVEFSGKYD ALKSLLPSPN KPDRASIVGE AIDYIKELKR  300
TVSELKSLVE KKKCGKERNK KPKTEEDGFG DYNGSLRCSW LQRKSKDAEV DVRIIDDEVT  360
IKLVQRKRIN CLLLVTKILD ELQLDLQHVA GGHAGDFYSF LFNTKIYEGS YVYATGIANR  420
LLEAVERQYA AVPPSSKY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021663258.11e-129transcription factor bHLH91-like
TrEMBLA0A2I4F1851e-125A0A2I4F185_JUGRE; transcription factor bHLH91-like isoform X2
STRINGcassava4.1_028473m1e-121(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-76bHLH family protein