PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0218s0020.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GATA | ||||||||
Protein Properties | Length: 305aa MW: 32384.4 Da PI: 7.5297 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.9 | 5e-17 | 222 | 256 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C nCgt++ Tp++Rrgp+g++tLCnaCGl+++ k Kalax.0218s0020.1.p 222 CKNCGTSSkhTPMMRRGPEGPRTLCNACGLKWANK 256 ********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 7.6E-8 | 85 | 120 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 12.618 | 85 | 120 | IPR010399 | Tify domain |
Pfam | PF06200 | 7.9E-10 | 88 | 119 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.6E-16 | 151 | 193 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.424 | 151 | 193 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.104 | 216 | 251 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 8.8E-11 | 216 | 272 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-10 | 216 | 258 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.3E-14 | 220 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.11E-11 | 221 | 271 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 222 | 249 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.4E-14 | 222 | 257 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MPDSHHHQMA SMYPSEAMSI GAQMENADAL VDGGGGQFGD SGVGQFEHHQ IEDEAARDGV 60 LTGPVEAVPP HSMYPLPGAD FGAGTGAGPN QLTLWFHGEA FVFEDVSAEK VQAVLLLLGG 120 YEVPGGANTG AVPQNERSIG DMYGRETQQK RAAALSRFRE KKKDRCFDKK IRYSVRKEVA 180 HRMKRKKGQF VSSKASSEDM GSGSSDGNAS PGAAKEEQET SCKNCGTSSK HTPMMRRGPE 240 GPRTLCNACG LKWANKIVLG KCPGTQNPSM KAAIRVDQTG GEKNGPVAMP SITDLVCFIS 300 TAQP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093060.1 | 4e-88 | GATA transcription factor 28-like isoform X1 | ||||
Refseq | XP_028093061.1 | 3e-88 | GATA transcription factor 28-like isoform X2 | ||||
Swissprot | Q8GXL7 | 8e-59 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A2R6Q694 | 2e-87 | A0A2R6Q694_ACTCH; GATA transcription factor | ||||
STRING | VIT_03s0038g00480.t01 | 5e-86 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-54 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0218s0020.1.p |
Publications ? help Back to Top | |||
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