PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0218s0020.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 305aa    MW: 32384.4 Da    PI: 7.5297
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0218s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95e-17222256133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C nCgt++  Tp++Rrgp+g++tLCnaCGl+++ k
  Kalax.0218s0020.1.p 222 CKNCGTSSkhTPMMRRGPEGPRTLCNACGLKWANK 256
                          ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.6E-885120IPR010399Tify domain
PROSITE profilePS5132012.61885120IPR010399Tify domain
PfamPF062007.9E-1088119IPR010399Tify domain
PfamPF062031.6E-16151193IPR010402CCT domain
PROSITE profilePS5101713.424151193IPR010402CCT domain
PROSITE profilePS501149.104216251IPR000679Zinc finger, GATA-type
SMARTSM004018.8E-11216272IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-10216258No hitNo description
Gene3DG3DSA:3.30.50.107.3E-14220256IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.11E-11221271No hitNo description
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
PfamPF003201.4E-14222257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPDSHHHQMA SMYPSEAMSI GAQMENADAL VDGGGGQFGD SGVGQFEHHQ IEDEAARDGV  60
LTGPVEAVPP HSMYPLPGAD FGAGTGAGPN QLTLWFHGEA FVFEDVSAEK VQAVLLLLGG  120
YEVPGGANTG AVPQNERSIG DMYGRETQQK RAAALSRFRE KKKDRCFDKK IRYSVRKEVA  180
HRMKRKKGQF VSSKASSEDM GSGSSDGNAS PGAAKEEQET SCKNCGTSSK HTPMMRRGPE  240
GPRTLCNACG LKWANKIVLG KCPGTQNPSM KAAIRVDQTG GEKNGPVAMP SITDLVCFIS  300
TAQP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093060.14e-88GATA transcription factor 28-like isoform X1
RefseqXP_028093061.13e-88GATA transcription factor 28-like isoform X2
SwissprotQ8GXL78e-59GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2R6Q6942e-87A0A2R6Q694_ACTCH; GATA transcription factor
STRINGVIT_03s0038g00480.t015e-86(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-54ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]