PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0217s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 173aa MW: 19329.7 Da PI: 9.0199 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 39 | 2.1e-12 | 128 | 168 | 2 | 42 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrf 42 Cq +g ++ ls++k+yh+rhkvC++hska+ v+v ++ rf Kalax.0217s0041.1.p 128 CQTKGFAVYLSNVKQYHQRHKVCQFHSKAAIVIVGVVTLRF 168 9*********************************9999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.7E-11 | 120 | 168 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 12.246 | 125 | 172 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-10 | 126 | 168 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-7 | 128 | 168 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MLEYELWQIP SLMTITSSGH DPPAVASHHD SHHFALPLDY AHQNAALRSS SNSNAFSYTP 60 PHYQNAAFYT SANPSFFLRR KRWVVSRGQD SGNLGRQTYF SMQDDDFVSR LYHHGGLGGG 120 ESMNAPGCQT KGFAVYLSNV KQYHQRHKVC QFHSKAAIVI VGVVTLRFLI EI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-21 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0217s0041.1.p |