PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0217s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 334aa    MW: 37165.9 Da    PI: 9.437
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0217s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.48.3e-142573155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Kalax.0217s0002.1.p 25 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDTAAQRFRG 73
                         689***9788.8*********3.....5*************************98 PP
2B397.87e-31152254194
                          EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                          f+kv tpsdv+k++rlv+pk++ae+h         +    +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  Kalax.0217s0002.1.p 152 FEKVVTPSDVGKLNRLVIPKQHAEKHfplntspaaSDAASKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLLAGDAVS 241
                          99*************************9999888855556999*********************************************** PP

                          EEE-SSSEE..EE CS
                   B3  82 Fkldgrsefelvv 94 
                          F++++  +++l++
  Kalax.0217s0002.1.p 242 FERSNGADRQLYI 254
                          **87666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-172581IPR016177DNA-binding domain
PfamPF008476.8E-92573IPR001471AP2/ERF domain
CDDcd000184.89E-252580No hitNo description
SMARTSM003808.1E-292687IPR001471AP2/ERF domain
PROSITE profilePS5103220.1782681IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-202681IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.0E-39145259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-30147255IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-28151247No hitNo description
SMARTSM010194.3E-24152260IPR003340B3 DNA binding domain
PROSITE profilePS5086314.325152260IPR003340B3 DNA binding domain
PfamPF023621.3E-28152255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MGSGASVITD SAIGVEAESR KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA  60
ARAYDTAAQR FRGRDAVTNF KPLAAETVDR DAVESAFLNS RSKAEIVDML RKHTYAEELE  120
QSRRIVGLDN GSGEVGGRAG CGHPVEPKEL LFEKVVTPSD VGKLNRLVIP KQHAEKHFPL  180
NTSPAASDAA SKGVLLNFED GGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLLAGDAV  240
SFERSNGADR QLYIDMKHKN GQLSDSQLLA HSTIRLFGVN IIKDPICNII MKHMNNPDED  300
NKRMRSGNEE KDLFGFQCMK KQRASSRDIV AYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-5414926111119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281709.21e-143PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9ZWM91e-129RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA5C2581e-142A5C258_VITVI; Uncharacterized protein
TrEMBLF6HFQ21e-142F6HFQ2_VITVI; Uncharacterized protein
STRINGVIT_01s0011g03070.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-131related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]