PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0216s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 442aa MW: 48201.6 Da PI: 5.3176 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.5 | 1.5e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v Kalax.0216s0009.1.p 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 67.4 | 4e-23 | 382 | 424 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ Kalax.0216s0009.1.p 382 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 424 9****************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.3E-11 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.049 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 7.7E-8 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.44E-9 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.083 | 382 | 424 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.7E-18 | 382 | 424 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 442 aa Download sequence Send to blast |
MTPDVKKVAN VVGGKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV 60 RLKTASFASV HGESGGHNKS SNRVPTWHSR KPRTPRGKKG GRFRSPKSDE VVRNPFYLVP 120 EAMSDDTTSF DESDGQLLFG RVPVFDSFAA ELCSPPHEAD AMEAFTDTGP ENVIACGGQR 180 REDFDEMKGF VGNFCNDLGF LPSEKDLEEF AADVETLLGT GLDDESFGID GLGLVGCNVD 240 VEGSFNCSVR GGGGGRVKDE EEEEEEAEET DMTREPFVLS FDYDEEGNGA SEAAEGGAVG 300 GGDVDVKVAK KMKILLKLDY EGFVSAWDGS SPWTSGTRPE VDPNDCWPTC MGACGIESHL 360 QRLGDPATGV NGRMGMLGDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR 420 FVKRCSSSFP AGSSNNVSLF T* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 392 | 408 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282578.1 | 1e-143 | PREDICTED: zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | D7T949 | 1e-142 | D7T949_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03520.t01 | 1e-143 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-89 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0216s0009.1.p |