PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0216s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 325aa    MW: 35622.6 Da    PI: 4.7016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0216s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.97.9e-16119166354
                  AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                          ykGVr++k +g+W+AeIrd +     +  r++lg++ tae+A  a+ +  +++e
  Kalax.0216s0008.1.p 119 YKGVRQRK-WGKWAAEIRDpF-----KgVRVWLGTYSTAEDASMAYQRKELEFE 166
                          9******9.**********55.....45******************88777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-22117165No hitNo description
SuperFamilySSF541718.5E-17117165IPR016177DNA-binding domain
SMARTSM003808.2E-18118179IPR001471AP2/ERF domain
PROSITE profilePS5103219.427118179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-21118170IPR001471AP2/ERF domain
PfamPF008474.7E-9119166IPR001471AP2/ERF domain
PRINTSPR003672.0E-9119130IPR001471AP2/ERF domain
PRINTSPR003672.0E-9141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MIKPLLINTK LASGSAVSSP VGSGVNSSTK SVRKVRIICS DPYATESSDD EYEYAERRCK  60
KVIQEIQLPS LRHAEKARSE GLTPSSSGLY SNSNGSKNYG KRRRMVSKPA ARRPSSSMYK  120
GVRQRKWGKW AAEIRDPFKG VRVWLGTYST AEDASMAYQR KELEFEAMAA AMKSHSNSSV  180
SGENVKAVVG ALRGAFESDE SESGVSHTSS SSVAEKAVFE SELGDMETAE KMNLVELVST  240
EDHHVDTFKT SLLDKEISLG LEFDSMFMDT DFSPVFDDFG AVENFDFLFD GVEDNSSTDL  300
PDFDIDLGST ELAWIEESLN IACP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-15119172357ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.29e-32ERF family protein