PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0214s0033.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 25132.1 Da PI: 4.7643 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.2e-18 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ g+Wv+e+r+p +k++r++lg+f t e+Aa+a++ a+++l+g Kalax.0214s0033.1.p 38 PVYRGVRRRN-AGKWVCELREP---NKKTRIWLGTFPTLEMAARAHDVAALALRG 88 68*****887.8*********8...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-14 | 38 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-28 | 39 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 39 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-21 | 39 | 98 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.19E-29 | 40 | 98 | No hit | No description |
PRINTS | PR00367 | 1.5E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDVSDLSNDH VSSHAPLLAS SNPKKRAGRK KFKETRHPVY RGVRRRNAGK WVCELREPNK 60 KTRIWLGTFP TLEMAARAHD VAALALRGSR ACLNFADSAW RLPVPESGDA EEIRRAAVEA 120 AEMFRPGTTS FNDGGGASTS SSSGSCGDDE FDEVMIGSNG DGGVSWSGSG GGMFEMEIED 180 FLGMSSWGLM VEMAEGLMMS PPPPPPPPPP YWEAVGGQEM DNDDVSLWSF SF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 37 | 95 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858875.1 | 7e-74 | PREDICTED: dehydration-responsive element-binding protein 1C-like | ||||
Swissprot | Q9FJ93 | 3e-64 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A022PVI8 | 2e-72 | A0A022PVI8_ERYGU; Uncharacterized protein | ||||
STRING | Migut.F01149.1.p | 3e-73 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25470.1 | 4e-45 | C-repeat/DRE binding factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0214s0033.1.p |
Publications ? help Back to Top | |||
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