PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0213s0052.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 538aa MW: 60564.4 Da PI: 5.2736 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 441 | 8.3e-135 | 166 | 537 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l+e+Ll+ A+a+s++dl a++l+++l++++s +g+pmqRl ay++e+L arl++s+s++yk+l+++e s++ l++++l++ev+P+ Kalax.0213s0052.2.p 166 LREVLLASAKAMSENDLVTAEWLMSQLNHMVSVSGEPMQRLGAYMLEGLIARLSSSGSSIYKSLRCKEPV--ASANLLSYMHLLYEVCPY 253 6899***************************************************************997..6999************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 +kf+++ aN aI ea+ e+r+HiiDf+i qG QW +L+qaL+++p gpp++RiTg+++p s+ + l +g+rL+kfAe+++vpfef Kalax.0213s0052.2.p 254 FKFGYMSANGAIAEAMRDENRIHIIDFQIAQGSQWFPLIQALSAQPCGPPQIRITGIDDPVSSyaRGGGLDIVGKRLSKFAESCNVPFEF 343 ************************************************************99999999********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 ++ + +d+e+e+Lr+++g+a+aVn++++lh+++desv ++++rd++L+lvk lsPkvv++ve+e+++n+++F+ rfle+l+yy+a+f Kalax.0213s0052.2.p 344 CS-ATVSGSDIEYESLRIRHGDAIAVNFAFMLHHMPDESVGTQNHRDRLLRLVKCLSPKVVTLVEHESNTNTSPFFPRFLETLDYYAAIF 432 **.8999*********************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +s++a+lpre+eeri+vE+++l+reivn+vaceg+er+erhe l kW++r+ ++GF+p+pls+ +++++k+ll+++ + yr+ee++g+l Kalax.0213s0052.2.p 433 ESIDATLPREHEERINVEQHCLAREIVNIVACEGTERVERHELLTKWKSRFVMSGFSPYPLSSVVNATIKTLLENYCD-KYRLEEKDGAL 521 ****************************************************************************95.5********** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +lgW++r+Lv+ SaWr Kalax.0213s0052.2.p 522 YLGWMNRALVASSAWR 537 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.835 | 140 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-132 | 166 | 537 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MQTSRRHGFS DDCLKQYEDV DPYQWGSAQE FDGAQKAQSA RIINSELHRT GGSSSVNSRI 60 PSFDPPSSDS FPANDSPERH LDSQSFESLM SYRIKHSHGI QSGVPNLNEE VEDFGGKLRE 120 LESVMFGPDL STLYLPECAF YEEPEQSLLQ TEKFRFFIQM ISRGDLREVL LASAKAMSEN 180 DLVTAEWLMS QLNHMVSVSG EPMQRLGAYM LEGLIARLSS SGSSIYKSLR CKEPVASANL 240 LSYMHLLYEV CPYFKFGYMS ANGAIAEAMR DENRIHIIDF QIAQGSQWFP LIQALSAQPC 300 GPPQIRITGI DDPVSSYARG GGLDIVGKRL SKFAESCNVP FEFCSATVSG SDIEYESLRI 360 RHGDAIAVNF AFMLHHMPDE SVGTQNHRDR LLRLVKCLSP KVVTLVEHES NTNTSPFFPR 420 FLETLDYYAA IFESIDATLP REHEERINVE QHCLAREIVN IVACEGTERV ERHELLTKWK 480 SRFVMSGFSP YPLSSVVNAT IKTLLENYCD KYRLEEKDGA LYLGWMNRAL VASSAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 6e-60 | 174 | 536 | 27 | 378 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812730.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_018812737.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_018812742.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Refseq | XP_018812749.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
Swissprot | Q9LDL7 | 0.0 | PAT1_ARATH; Scarecrow-like transcription factor PAT1 | ||||
TrEMBL | A0A2I4E017 | 0.0 | A0A2I4E017_JUGRE; scarecrow-like protein 21 | ||||
STRING | cassava4.1_004951m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0213s0052.2.p |
Publications ? help Back to Top | |||
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