PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0213s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 538aa    MW: 60564.4 Da    PI: 5.2736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0213s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4418.3e-1351665371374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+e+Ll+ A+a+s++dl  a++l+++l++++s +g+pmqRl ay++e+L arl++s+s++yk+l+++e     s++ l++++l++ev+P+
  Kalax.0213s0052.1.p 166 LREVLLASAKAMSENDLVTAEWLMSQLNHMVSVSGEPMQRLGAYMLEGLIARLSSSGSSIYKSLRCKEPV--ASANLLSYMHLLYEVCPY 253
                          6899***************************************************************997..6999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea+  e+r+HiiDf+i qG QW +L+qaL+++p gpp++RiTg+++p s+  +   l  +g+rL+kfAe+++vpfef
  Kalax.0213s0052.1.p 254 FKFGYMSANGAIAEAMRDENRIHIIDFQIAQGSQWFPLIQALSAQPCGPPQIRITGIDDPVSSyaRGGGLDIVGKRLSKFAESCNVPFEF 343
                          ************************************************************99999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                             ++ + +d+e+e+Lr+++g+a+aVn++++lh+++desv ++++rd++L+lvk lsPkvv++ve+e+++n+++F+ rfle+l+yy+a+f
  Kalax.0213s0052.1.p 344 CS-ATVSGSDIEYESLRIRHGDAIAVNFAFMLHHMPDESVGTQNHRDRLLRLVKCLSPKVVTLVEHESNTNTSPFFPRFLETLDYYAAIF 432
                          **.8999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++a+lpre+eeri+vE+++l+reivn+vaceg+er+erhe l kW++r+ ++GF+p+pls+ +++++k+ll+++ +  yr+ee++g+l
  Kalax.0213s0052.1.p 433 ESIDATLPREHEERINVEQHCLAREIVNIVACEGTERVERHELLTKWKSRFVMSGFSPYPLSSVVNATIKTLLENYCD-KYRLEEKDGAL 521
                          ****************************************************************************95.5********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r+Lv+ SaWr
  Kalax.0213s0052.1.p 522 YLGWMNRALVASSAWR 537
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.835140518IPR005202Transcription factor GRAS
PfamPF035142.9E-132166537IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MQTSRRHGFS DDCLKQYEDV DPYQWGSAQE FDGAQKAQSA RIINSELHRT GGSSSVNSRI  60
PSFDPPSSDS FPANDSPERH LDSQSFESLM SYRIKHSHGI QSGVPNLNEE VEDFGGKLRE  120
LESVMFGPDL STLYLPECAF YEEPEQSLLQ TEKFRFFIQM ISRGDLREVL LASAKAMSEN  180
DLVTAEWLMS QLNHMVSVSG EPMQRLGAYM LEGLIARLSS SGSSIYKSLR CKEPVASANL  240
LSYMHLLYEV CPYFKFGYMS ANGAIAEAMR DENRIHIIDF QIAQGSQWFP LIQALSAQPC  300
GPPQIRITGI DDPVSSYARG GGLDIVGKRL SKFAESCNVP FEFCSATVSG SDIEYESLRI  360
RHGDAIAVNF AFMLHHMPDE SVGTQNHRDR LLRLVKCLSP KVVTLVEHES NTNTSPFFPR  420
FLETLDYYAA IFESIDATLP REHEERINVE QHCLAREIVN IVACEGTERV ERHELLTKWK  480
SRFVMSGFSP YPLSSVVNAT IKTLLENYCD KYRLEEKDGA LYLGWMNRAL VASSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6017453627378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812730.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812737.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812742.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_018812749.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2I4E0170.0A0A2I4E017_JUGRE; scarecrow-like protein 21
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]