PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0212s0029.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 126aa    MW: 14263.9 Da    PI: 6.2653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0212s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-201970256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr ++ +g+++AeIrd      ++ +r++lg+fgtaeeAa+a+++a+ +++g+
  Kalax.0212s0029.1.p 19 KYRGVRCRP-WGKYAAEIRD----SaRHgARVWLGTFGTAEEAARAYDKAAYSMRGH 70
                         8*****999.**********....33236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.7081977IPR001471AP2/ERF domain
PfamPF008473.9E-151970IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-231978IPR016177DNA-binding domain
CDDcd000186.03E-271978No hitNo description
Gene3DG3DSA:3.30.730.101.1E-301979IPR001471AP2/ERF domain
SMARTSM003801.1E-311983IPR001471AP2/ERF domain
PRINTSPR003676.4E-112031IPR001471AP2/ERF domain
PRINTSPR003676.4E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAGKEEQCQR NVSGESVVKY RGVRCRPWGK YAAEIRDSAR HGARVWLGTF GTAEEAARAY  60
DKAAYSMRGH MAVLNFPEEY GLRPKKSHET SSASSSRKEV FEFECLDDEL LDEMLRDTND  120
QPPQW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-3561102114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733438.15e-40ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC56e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2G9I9T04e-45A0A2G9I9T0_9LAMI; Uncharacterized protein
STRINGOPUNC09G18680.12e-40(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.17e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]