PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0212s0028.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 214aa    MW: 23735.8 Da    PI: 5.1766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0212s0028.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1773123255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr ++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  Kalax.0212s0028.1.p  73 SYRGVRSRP-WGKFAAEIRDSTRNG--IRVWLGTFDSAEAAALAYDQAAFAMRG 123
                          69****999.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.31E-2072133No hitNo description
SMARTSM003801.4E-3573137IPR001471AP2/ERF domain
PROSITE profilePS5103222.60373131IPR001471AP2/ERF domain
PfamPF008473.1E-1273123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3073132IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2173132IPR016177DNA-binding domain
PRINTSPR003679.1E-107485IPR001471AP2/ERF domain
PRINTSPR003679.1E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDFCPQSSSS FSWEDPFNSS LPFNVNDSQE MLLWDMLSSS PATTTSSSEE LQPVQTQDER  60
EVDSVKAAKK SKSYRGVRSR PWGKFAAEIR DSTRNGIRVW LGTFDSAEAA ALAYDQAAFA  120
MRGSAAVLNF PAATVMDSMK GMAVRCEEGC SPVLELKKKH LLRRKSSTMP RKAAKQIGEE  180
NCEGLSRQWK CEKNNVVVFE DLGAEYLEEL LLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-27741381579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017229963.15e-68PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y91e-64ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2R6PP945e-70A0A2R6PP94_ACTCH; Ethylene-responsive transcription factor 1B like
STRINGXP_010093429.14e-66(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-42ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]