PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0212s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 346aa    MW: 37496.2 Da    PI: 10.4671
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0212s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507e-1682127147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+++W++Ia++++ gR++k+c++rw++ 
  Kalax.0212s0011.1.p  82 RGHWRPAEDAKLKHLVAHFGPHNWNLIAHKLQ-GRSGKSCRLRWFNQ 127
                          899*****************************.***********996 PP
2Myb_DNA-binding491.4e-15135177246
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           +++ eE+ +l+ a++ lG++ W++Ia+ ++ gRt++ +k++w+ 
  Kalax.0212s0011.1.p 135 RAFSDEEEGRLLAAHATLGNK-WALIAKLFP-GRTDNAVKNHWHV 177
                          689******************.*********.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.00477128IPR017930Myb domain
SMARTSM007171.7E-1381130IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-2782178IPR009057Homeodomain-like
PfamPF002491.4E-1582127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2583135IPR009057Homeodomain-like
CDDcd001675.40E-1385126No hitNo description
PROSITE profilePS5129423.965129183IPR017930Myb domain
SMARTSM007172.6E-12133181IPR001005SANT/Myb domain
PfamPF002492.9E-13135176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-19136181IPR009057Homeodomain-like
CDDcd001671.00E-9136176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVTVKPSIMM SRLLPPPPVS YTCYDPPRKN PSQTRHFHSL LLPPTATGAQ VDAKKTTIVQ  60
GGRPILETDS NDGGAVVKVC SRGHWRPAED AKLKHLVAHF GPHNWNLIAH KLQGRSGKSC  120
RLRWFNQLDP KINKRAFSDE EEGRLLAAHA TLGNKWALIA KLFPGRTDNA VKNHWHVIVA  180
RRQREQSRHC YKQQQQSLSL GTNTHQLERS INLASNGGGL AYSDDVSRST IVDEYNPSAT  240
ATATASVDLS LSPTSVAASF GKFHQHHYFL ERGSGQSVGA AGSSKHTADT ASAAASRNVR  300
GCRVVLCGGN GKESAQNENN NGVSKSKSKS KSVHYFDFLG LGPAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31821827107B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254925.12e-70PREDICTED: myb-related protein 330
TrEMBLA0A161ZXU15e-69A0A161ZXU1_DAUCS; Uncharacterized protein
STRINGcassava4.1_009525m1e-66(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.16e-65myb domain protein 56