PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0210s0074.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 277aa MW: 30356 Da PI: 6.9773 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.9 | 1.5e-30 | 88 | 141 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Kalax.0210s0074.1.p 88 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 141 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 85 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.42E-20 | 85 | 145 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-30 | 87 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-24 | 89 | 141 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-7 | 91 | 140 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MKEDESNWLS RWEEQLPSPD ELMPLSQTLI TPHLALVFDL HNPNNPQSTP LPAPTPSSLA 60 HPSSSEFENS GDLGSGAGGD EPARTLKRPR LVWTPQLHKR FVDAVAHLGI KNAVPKTIMQ 120 LMSVDGLTRE NVASHLQKYR LYLKRMQGHS NGGGGLASSD PATDHLFASS PVPAHFLHPV 180 RPGQDHFMPF VAPPQSGRPI WVTHPQLQQQ FHQQRQVGQV GHFGSPHSNG QFEHSFMTRQ 240 QAGPRMGAPP PYGEDVESGE ANGRRTVLTL FPTGDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-32 | 88 | 144 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036386.1 | 1e-116 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 6e-65 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A059A3P3 | 1e-115 | A0A059A3P3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010036386.1 | 1e-116 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-85 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0210s0074.1.p |
Publications ? help Back to Top | |||
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