PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0210s0047.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 159aa MW: 17291.6 Da PI: 7.4688 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk lrrkC++dC+l+pyfp+++p++fa vhk+FGa+n++k+l+++p + r ++++++++eA r+rdPvyG+vg+i++lqqq+ q+ Kalax.0210s0047.1.p 10 RCAACKCLRRKCPADCILSPYFPSSNPQRFASVHKVFGAANITKMLEQVPVHLRGQTAECMIFEAATRTRDPVYGSVGIISQLQQQITQV 99 6***************************************************************************************** PP DUF260 91 kaelallkee 100 ++e+ +++ e Kalax.0210s0047.1.p 100 QNEIMKIQGE 109 ***9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.018 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.4E-39 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSHHHSSSTR CAACKCLRRK CPADCILSPY FPSSNPQRFA SVHKVFGAAN ITKMLEQVPV 60 HLRGQTAECM IFEAATRTRD PVYGSVGIIS QLQQQITQVQ NEIMKIQGEI ALQSAQLQHN 120 QTQTTLRMEQ LSDQSGLEVG PDIGLGLNVD TGPSSGADA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 11 | 110 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892506.1 | 4e-52 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 5e-42 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2K1YZY8 | 2e-50 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010278070.1 | 4e-50 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-28 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0210s0047.1.p |