PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0209s0054.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 349aa    MW: 38708.4 Da    PI: 6.2431
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0209s0054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-092743101955
                          HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +k +yps++++  LA+++gL+++q+ +WF N+R ++
  Kalax.0209s0054.1.p 274 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 310
                          45679*****************************885 PP
2ELK41.23.5e-14230251122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK qLlrKYsgyLgsLkqEF+
  Kalax.0209s0054.1.p 230 ELKGQLLRKYSGYLGSLKQEFM 251
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-2093137IPR005540KNOX1
PfamPF037904.2E-2194133IPR005540KNOX1
SMARTSM012564.1E-25142193IPR005541KNOX2
PfamPF037913.9E-21146191IPR005541KNOX2
PROSITE profilePS5121311.174230250IPR005539ELK domain
PfamPF037895.7E-11230251IPR005539ELK domain
SMARTSM011882.8E-8230251IPR005539ELK domain
PROSITE profilePS5007113.054250313IPR001356Homeobox domain
SuperFamilySSF466891.33E-19252328IPR009057Homeodomain-like
SMARTSM003891.9E-12252317IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-27255315IPR009057Homeodomain-like
CDDcd000861.39E-12262314No hitNo description
PfamPF059208.2E-17270309IPR008422Homeobox KN domain
PROSITE patternPS000270288311IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEADCDGGGV GFGGNGLSSS GNIGGLMMMM PPPPRSSTAG TNNSSSSSPN PNHIRPFFFP  60
PTPNNNSHNN PNYSSRDNYI MDADASGSCG SSEALKAKIM SHPHYHRLVA AYVNCQKVGA  120
PPEVVEKLEQ ACAAGAGLSR SISGCLGEDP GLDQFMEAYC EMLAKYEQEL SKPFKEAMAF  180
LSRIESQFKA LSLSSSDSPA YGQGSDRNGY PDEDIDVDND FIDPLAEDRE LKGQLLRKYS  240
GYLGSLKQEF MKKRKKGKLP KEARQQLLEW WTRHYKWPYP SESQKLALAE STGLDQKQIN  300
NWFINQRKRH WKPSEDMQFV VMDGAHPHYY MDNMMGNPYP MDISPGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245254LKQEFMKKRK
2251255KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021294108.11e-153homeobox protein SBH1 isoform X2
SwissprotP466081e-138HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA5X9E91e-159A5X9E9_KALDA; STM protein (Fragment)
STRINGEOY288071e-152(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-122KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]