PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0209s0003.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 533aa MW: 58839.7 Da PI: 8.9609 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.6e-16 | 59 | 105 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+ Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l Kalax.0209s0003.3.p 59 KGGWTQHEDETLRNAVAAFKGKSWKKIAEFFP-DRSEVQCLHRWQKVL 105 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.1e-18 | 111 | 157 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++ ++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l Kalax.0209s0003.3.p 111 KGPWTQEEDDKITELVARYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 55.3 | 1.5e-17 | 163 | 206 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Ia+ ++ gRt++++k++w++ Kalax.0209s0003.3.p 163 KDAWTLEEELALMNAHRLYGNK-WAEIAKVLP-GRTDNSIKNHWNS 206 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.916 | 54 | 105 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.09E-14 | 56 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-13 | 58 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.7E-14 | 59 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-19 | 61 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.10E-11 | 62 | 105 | No hit | No description |
PROSITE profile | PS51294 | 29.156 | 106 | 161 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-31 | 108 | 204 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 110 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-18 | 111 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.60E-15 | 113 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 116 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.948 | 162 | 212 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-16 | 162 | 210 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-16 | 163 | 206 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-23 | 165 | 212 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-12 | 165 | 208 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MGELKIEEIC LENKQSLAAS SSSFSEGSGS ITIRSPGVSS PATTSPSQRR TTGPIRRAKG 60 GWTQHEDETL RNAVAAFKGK SWKKIAEFFP DRSEVQCLHR WQKVLNPELI KGPWTQEEDD 120 KITELVARYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPY IKKDAWTLEE ELALMNAHRL 180 YGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KLDFYLATGN LPPISKNGAP NGVKDFNKST 240 ASRKAPACSK RESDSTAQSS SGTTEICNME DAKGQFESSA SHQDVHKPVL RSQVLPGHEV 300 IGCKDPPPKV EYRYTNIESM PEIENSRPGS YTVTNSVVRD SPQFETLTYG SLYYEPPSVE 360 SSIPSDTDLP DGQYKFHEVF SSATFSTPPS SKSRASLSPE SILKNAAKTF QNTPSIIRKR 420 RIDAETPPST NKSSKAEGGT IHDGHITYSE TEGPGYEPRE EQFCHSHADV GKEKTGACNG 480 TAYNVSPPYR LRTKRSSVIK SVEKQLAFTF DDLAIKGKST AAKDNPDANN AC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-67 | 58 | 212 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077818.1 | 0.0 | transcription factor MYB3R-5 isoform X1 | ||||
Swissprot | Q6R032 | 1e-157 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | F6HLC5 | 0.0 | F6HLC5_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0007g00360.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-148 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0209s0003.3.p |
Publications ? help Back to Top | |||
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