PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0207s0010.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 785aa MW: 90530.4 Da PI: 8.0219 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88 | 1.3e-27 | 58 | 145 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e + + ++r+ + ++t+Cka+++vkk+ gkw+v+++++eHnHel Kalax.0207s0010.3.p 58 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGISPEPDCT---SSRRPTLKKTNCKASMHVKKRPGGKWVVYSFVKEHNHELL 144 5*****************************************99998...7788899*******************************97 PP FAR1 91 p 91 p Kalax.0207s0010.3.p 145 P 145 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-25 | 58 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.1E-22 | 265 | 356 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.324 | 546 | 581 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 8.6E-7 | 553 | 578 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-6 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 785 aa Download sequence Send to blast |
MVDHVQENHT YDGLNTNDAA TLLHKYGGAV DILEGDALQI EGEPHGGIEF ECHEAAYSFY 60 QEYAKSMGFT TSIKNSRRSK KSKEFIDAKF ACSRYGISPE PDCTSSRRPT LKKTNCKASM 120 HVKKRPGGKW VVYSFVKEHN HELLPALAYH FRIHKNVKVA EKNNIDILHA VSERTRKMYV 180 EMSRHSSEFW SFEFLKTDTV SQFDRGLHLA LDVGDAQFIL EYFKHVKKDS PGFLYAIDLN 240 EEHRLRNLFW VDAKSRSDYS SFSDVISLES CYIKNNSKMP FVPFVGVNNH FQPILLGCAL 300 VADDSKSTFV WLMKTWLRAM GGLAPKVIIT DHDQAMKMAV EEVFSTSCHC FSLHSILEKA 360 SEILIHVIQC HPKFLQKFNK CIFKSWTEED FDMRWWKMIG RFELQEYEWI RLLYDHRKKW 420 VPTYMKGTFL GGMCPIQRSE SMSAFLDRYI HKKITLKEFV RQYGTILHNI FEDEALADFD 480 TWHKQPALKS PSPWEKQVSA LYTHAIFKKF QVEVLGVVGC HIEKVGDDGT TVTFKVQDCE 540 KNERFYVAWI EAKSEVYCSC RSFEYRGFLC RHAMIVLQIC GFSSIPSQYI LTRWTKDAKS 600 MQSSSIGAIR VEDRIQRYNY LCKRAIELCE EGSLSQDNYS VAIRFLVEAL KNCVNENDSN 660 KNVGDSNNAS ILKEHHGSLA FKRNKKRNPN KKRRALSETE FSADTSSNLH QMEHLGTDVM 720 TLSGLYGTQQ NVPLNLMEPP HDAYYINQQS LQGLVGLVEV AHMHVCDQYY IRLNSGLRIE 780 CRHS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024182083.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A2P6S0S3 | 0.0 | A0A2P6S0S3_ROSCH; Putative transcription factor FAR family | ||||
STRING | VIT_03s0017g01810.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0207s0010.3.p |