PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0206s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 29651.6 Da    PI: 8.7069
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0206s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.13.7e-31959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fss+gkl+eys+
  Kalax.0206s0022.1.p  9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSSKGKLFEYST 59
                         79***********************************************96 PP
2K-box103.33.1e-34851769100
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                          + +  +e+++ e++k+k+++e Lqr+qRh+lGe+LesLsl+eLq+Leq L+ +lk+iRs+Kn+l++e+i+elqkkek++qe+n+ L kk+
  Kalax.0206s0022.1.p  85 QPNPSQENWSLEYTKMKSKLELLQRNQRHYLGEELESLSLRELQNLEQSLDAGLKHIRSRKNQLMHESISELQKKEKAMQEQNNLLAKKI 174
                          6677899**********************************************************************************9 PP

                K-box  99 ee 100
                          +e
  Kalax.0206s0022.1.p 175 KE 176
                          87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.618161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.25E-42279No hitNo description
SuperFamilySSF554553.4E-34287IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-313859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-2889174IPR002487Transcription factor, K-box
PROSITE profilePS5129717.14590180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL AGIEQPNPSQ ENWSLEYTKM KSKLELLQRN QRHYLGEELE  120
SLSLRELQNL EQSLDAGLKH IRSRKNQLMH ESISELQKKE KAMQEQNNLL AKKIKENEKT  180
MGQQAQWGHQ PHQQNHGHGH GHGASAFIIP QTLPCLNMGI PYQGEVEHVR QHHNNNNDLD  240
LTLEPIFGCN NLGCFAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-23174173MEF2 CHIMERA
6byy_B8e-23174173MEF2 CHIMERA
6byy_C8e-23174173MEF2 CHIMERA
6byy_D8e-23174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268210.11e-128apetala1
SwissprotQ6E6S71e-129AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A061EAI91e-122A0A061EAI9_THECC; K-box region and MADS-box transcription factor family protein
STRINGVIT_01s0011g00100.t011e-127(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]