PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0205s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 372aa    MW: 39955.6 Da    PI: 6.3691
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0205s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box292.3e-092557436
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                         + C+ +++  ++lfC++++ +lC  C +++H  
  Kalax.0205s0038.1.p 25 KLCDSCKSATATLFCRNDSAFLCVACDSKIHAA 57
                         58*****************************54 PP
2zf-B_box25.52.6e-0867111341
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                           ++C+ +e+ +++  C+ +   lC +C   +H+       H++ p
  Kalax.0205s0038.1.p  67 VWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERLP 111
                          689*****************************6688888898877 PP
3CCT70.15.7e-24297340144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Kalax.0205s0038.1.p 297 REARVMRYREKRKSRKFEKTIRYASRKAYAETRPRIKGRFAKRA 340
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-142269IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7792269IPR000315B-box-type zinc finger
PfamPF006436.5E-72564IPR000315B-box-type zinc finger
CDDcd000211.81E-92669No hitNo description
PROSITE profilePS5011910.80865112IPR000315B-box-type zinc finger
PfamPF006439.1E-767112IPR000315B-box-type zinc finger
CDDcd000214.51E-968112No hitNo description
SMARTSM003364.7E-1070112IPR000315B-box-type zinc finger
PfamPF062035.1E-18297339IPR010402CCT domain
PROSITE profilePS5101716.876297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGEAKKLPTW PTATPAAATA IAASKLCDSC KSATATLFCR NDSAFLCVAC DSKIHAANKL  60
ASRHARVWMC EVCEQAPAHV TCKADAAALC VTCDRDIHSA NPLARRHERL PVVPFYDSAA  120
HHGGDKFANG YFAAACDADE AEAASWLMPN LNSKLEDPEQ AQASFNMYAD VDPYLDLDFG  180
PKDFQNKQEA NHEHNSSGAD GVVPEQCNKI SDAPTLFAGN GAREDPCFDV DFIEPAKGFP  240
YFASANAHSI SHSVSSSSHE VGVVPDGGTM IDVSNPFGRQ SGGEAAAQAV PLFGAEREAR  300
VMRYREKRKS RKFEKTIRYA SRKAYAETRP RIKGRFAKRA DGGDVAGVEQ MYDMNSLAIG  360
GGEAYGVVPS Y*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022732716.11e-128zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ940T91e-116COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0D3R1Y41e-126A0A0D3R1Y4_GOSBA; CONSTANS-like 3 protein
TrEMBLA0A0D3R2721e-126A0A0D3R272_GOSBA; CONSTANS-like 3 protein
TrEMBLA0A0D3R2851e-126A0A0D3R285_GOSHI; CONSTANS-like 3 protein
TrEMBLA0A0D3R2A21e-126A0A0D3R2A2_GOSBA; CONSTANS-like 3 protein
TrEMBLA0A0D3R2W81e-126A0A0D3R2W8_GOSMU; CONSTANS-like 3 protein
STRINGevm.model.supercontig_1332.11e-125(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-111CONSTANS-like 4