PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0204s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

BBR-BPC

Protein Properties

Length: 346aa MW: 38790.6 Da PI: 9.4998

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0204s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	363.8	3.3e-111	1	345	1	301
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 mdd g+re r+++ +y+ + +++ +q+m+++aerda+i+ernlalsekk a+aerd aflqrd+a++ern+a++er Kalax.0204s0029.1.p 1 MDDGGHREngRHRAdQYKaaqsqwlmQ-----HHQpsMKQIMTIMAERDAAIQERNLALSEKKTAMAERDLAFLQRDNAINERNNAIMER 85 9***9999*999654333331.....3322146************************************************* PP GAGA_bind 78 dnkllalllvensla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrq 154 dn+l++l+++e+ ++ +++p+g+q+++g+k++++ qq+ +q ++ +++ r+++++ea ++ a++a +++ ++ Kalax.0204s0029.1.p 86 DNALATLQYRETPMNgdngmsqiqTQCPSGCQISRGVKHLHHPQQHVLddenQQHTEAPYNSRDMDITEAISLSPVASDAAKSRG---NK 172 ********999999999999****************94324677888999999999998887776554444443333...44 PP GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesad.er............................skaekksidlvlngvslDestlPvPvCsC 215 r+k+pk+ ++kk +k++ +kvkk s+ ++ k+++k +dl+ln v +D++ +P+PvCsC Kalax.0204s0029.1.p 173 RTKEPKSVSSNKKVQKNP---NKVKKGSDGfSKhmfgkphewrderdmgsgsddvnkqivvLKSDWKGQDLGLNLVVYDDTIMPPPVCSC 259 455555444443333222...2333333222223466677788999**************************************** PP GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 tG rqCYkWGnGGWqS+CCtt+iS+yPLP ++++r+aR++grKmS+gaf+klL++LaaeG+dl +pvDLkd WAkHGtn+++ti+ Kalax.0204s0029.1.p 260 TGNFRQCYKWGNGGWQSSCCTTSISQYPLPSVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLTKPVDLKDNWAKHGTNRYITIK 345 ***********************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.8E-157	1	345	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	7.4E-98	1	345	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MDDGGHRENG RHRADQYKAA QSQWLMQHHQ PSMKQIMTIM AERDAAIQER NLALSEKKTA 60 MAERDLAFLQ RDNAINERNN AIMERDNALA TLQYRETPMN GDNGMSQIQT QCPSGCQISR 120 GVKHLHHPQQ HVLDDENQQH TEAPYNSRDM DITEAISLSP VASDAAKSRG NKRTKEPKSV 180 SSNKKVQKNP NKVKKGSDGF SKHMFGKPHE WRDERDMGSG SDDVNKQIVV LKSDWKGQDL 240 GLNLVVYDDT IMPPPVCSCT GNFRQCYKWG NGGWQSSCCT TSISQYPLPS VPNKRHARVG 300 GRKMSGGAFN KLLSRLAAEG HDLTKPVDLK DNWAKHGTNR YITIK*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MDDGGHRENG RHRADQYKAA QSQWLMQHHQ PSMKQIMTIM AERDAAIQER NLALSEKKTA  60
MAERDLAFLQ RDNAINERNN AIMERDNALA TLQYRETPMN GDNGMSQIQT QCPSGCQISR  120
GVKHLHHPQQ HVLDDENQQH TEAPYNSRDM DITEAISLSP VASDAAKSRG NKRTKEPKSV  180
SSNKKVQKNP NKVKKGSDGF SKHMFGKPHE WRDERDMGSG SDDVNKQIVV LKSDWKGQDL  240
GLNLVVYDDT IMPPPVCSCT GNFRQCYKWG NGGWQSSCCT TSISQYPLPS VPNKRHARVG  300
GRKMSGGAFN KLLSRLAAEG HDLTKPVDLK DNWAKHGTNR YITIK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900266.1	0.0	protein BASIC PENTACYSTEINE6
Swissprot	Q8L999	1e-140	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A371G1G2	1e-178	A0A371G1G2_MUCPR; Protein BASIC PENTACYSTEINE6 (Fragment)
STRING	cassava4.1_029314m	1e-178	(Manihot esculenta)
STRING	XP_006435130.1	1e-178	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	1e-135	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	Kalax.0204s0029.1.p